MmuINT0007604 @ mm9
Intron Retention
Gene
ENSMUSG00000050296 | Abca12
Description
ATP-binding cassette, sub-family A (ABC1), member 12 [Source:MGI Symbol;Acc:MGI:2676312]
Coordinates
chr1:71393160-71395776:-
Coord C1 exon
chr1:71395591-71395776
Coord A exon
chr1:71393339-71395590
Coord C2 exon
chr1:71393160-71393338
Length
2252 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGTGGTTTGGCTTTCGAAGATG
3' ss Score
5.39
Exon sequences
Seq C1 exon
CTGCTGAAGCAAAATTCAACTCCAGAAGACATACGAAGAGAGCTGTGTGAGAGCTACCCTGGGTACACTGCGGACTATGCCTTCTCTTGGGTCACCCTAGGAAAAAACGTTTTTAACAAATTTTGCCTTTCGAACATGACACTTTTAGAGTCTTCACTCCAGGAACTAAAATATCAAGTCTCTCAG
Seq A exon
GTGAGTGCAGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTGCACACACACATGTATTTGTATATATTCAAAATCTTATGCATAATTCCCTGGGTCTCCAAACTGACTCACTATGAGTCACTAAGCAACTCTGTAGCTCACTTAGACTAAGAAATATTGATTGGAATATTTGTAGACCTTCAGCATAATTTCTTCACACATAAACATTTACACCCAGGATTTGATGTTAAGTACCGGATATTTATCATTAAGATATGCAGGACTGAAATGATTTGATGTTGACTTTGAAATATTTCATATGGCTAATGTACATACACACGTCAGATGAAATATGACTTGGCTCTCTATTGAATAATGAGTGTGTTCCCTGAGACCTGGGAGTATCGTTACATAGGACAGAATGCAAGTTTAATAATTCAACTGTAACACTCATATTCTTGTCAGAAGTTAGAAAAATGGGTGATGTCTTTTTATTTTTCTCACAGCATCAAACTTCATTTGGTGACTTTTGATGGAATCATTTATCCTTGCTCCTCAAATCTTACATATCAGAGCCAATTCTGTTCTGATAAAAGTGCCATATGTGTACACATGACATATGTGTATACTAGTCTTAAGTTGTGGTGGTAAAATCAAAACACCGATAGGCTAAGTTTAATGAAATCTACATGTAGCAAAAGTATGAAAAAATTCAGAATTCTTCTCAAATTTTATAGACAGGAATAAATAAAGCATGCCTATTTTAACATTTCCCTCTTGGTTCTTTAAATTAAACTGAAAGTGGCTTTTAATTTTTTAAATTGTATCATTTAGTAATGTGGTTTTCAAAAGGGCCAGGTTAAGGACACCATTGTAATAGCTCAAATATTATATGAAACTCTCCCATCCTTGAATTGTAAGAGGACTGGAGATGTATCCCAGGAGTAGAAGGTTTGCTCAAACCCCCAGTACTAAAAAATCCAAACCCAACCAACCAACCAAGAAACAAACAAACACTTCCTCACTTAAATTCTTCGATCATGTCTAAGTGGCCAAAAATATACTGTTCAAAACCAATCAAATTAAGAGAGATGGGAGGTTCATCCTGACTGGTATGAATGGGGTTATGAACAGAATTGCTTTTGTTGAGAACATAATGAAGAAATATTTCTGAAGACATTACCTGGATCATGTGATCCAAAAGCCATATTTTTTCTGGTTTATTGATAAAGTACAATTATTGATAGTGTGGTGATCAGGTTAGGGGTTCATTATAACTAATGTCCATAGCTTTGCAACAGAATCTAGAAACACCTTATTCTATTATGTATAGCTCTGGTAGTAAGCACTTTGGTAAATATAGTTCTACATGAATATATCTATAAAATATTTCTGACATTTTCCCACACACATTAGTTTTAATGAAAATCCACCAAAAATAGGCATCTTAGTTAGTAAAAGATATGGGAATAATACGGCTACAGCTCCCAGGAAATTTTATAAGGAAAAAAACAAAACAACACTACTCGGGGTCCTGTGGACATAAAAGAGAGGCTGTACATATGAGTTCATGGTGATTGTGGAAGCATGCATAAGACCTATACAAGCTCAAGCTAGACTACTTCCCAGTATGGAGTGGAGAGGTGGGCATGGTGTCTCAGTGCTAGTCAAGGAGGTATTGACATCTGAGAGATGCTGGGCAAGAGTCAGTTTTCTTTGAGAGTGTAGCTCCTGATAAGGTGACCACACTCCAGAGGGAAACTCCTCATCAGGGAATGTATGAACAAGTTGGACTTGATGGGCAAGAAAACAAAAAAAGAGGATGACACAAAGTTGGTTAGGTAGGGAAGTGGGTGTGTGTGTGGGTAGTGGATGAGTACAAGCAAAACACATTGTATTATATTCCCGAAGAACCAATAAAATAAAAGAAGAAAAATACTCAGAAATTAACATGTTCATTTTCTTTTTAATTAAGTTAGCTTTAATTTCTTAATATCTCACTTAGACCATTTTATAACAATACGATTTTGTTAATCAAACTTAAAATATGCTAATATCTGGGACTCAAAAGGGGAAAAATTATCCAATGATTTTGGAAGATGTTCACAGTTTTTCCAAGAAAGAGATGGCTTCAAACAGAGTGAAGATTTGAAAACAGCATGAATGTGAAAAATATGTTTTTTTTTAATCTTTCGGAAGACAGTAAACCATGTGATTACAAATGCTAACGTATCATCTTTTTCCTCTGTGGTTTGGCTTTCGAAG
Seq C2 exon
ATGTCAAGTGACCCCGACAATCAGAAGAGGGTGTTCCGGGGACTTGTCCAGGTGCTGTCCTTTTTCTCTCAAGTGCAGCAGCAAAGAGAAGTGTGGCAACTTCTGTCGAGCTTACCAGATGTGTTTCAGAATGGCACCTCATTGAGCAGTCTATTTGGTGTTCTTCAAAAGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050296-Abca12:NM_175210:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146371=FNIP_M=PU(24.8=51.6)
A:
NA
C2:
PF146371=FNIP_M=FE(45.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: