BtaINT0010963 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003531 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr4:7337210-7339975:-
Coord C1 exon
chr4:7339795-7339975
Coord A exon
chr4:7337429-7339794
Coord C2 exon
chr4:7337210-7337428
Length
2366 bp
Sequences
Splice sites
5' ss Seq
CATGTGCGT
5' ss Score
5.1
3' ss Seq
CTGACGTGTCTTCTCTGCAGATC
3' ss Score
11.55
Exon sequences
Seq C1 exon
GCTCATCCCTGCAAAACGGGAAAGGAGAGCTGGAAGGAGGCTCCCCCGGCGTTGTCCTGCTTTCCGTGACCAAGGAGCATGATCGCCACAAGGCGGGGGTCTGGGACCTGACCCTGACCTTCCACAGGGACCAGATCACTGCGCTGCTGGGGACCAACGGGGCTGGGAAGACCACCGTCAT
Seq A exon
GTGCGTCCCACTCCCCTTCTCCCGCCTTCCCTCCAGGGCTTGGGTTCTTAGAGATGTGTTTACCTGTGAGATAGGGGCTGGATCCCTTTTTTGTTTGTTTATTTTTGTTTAGTTTCAGTTATTGTTGTTCAGATGCTAAGTCCTGTCTGACTCATTGTGACCCCACGGACTGCAGCACACCAGGATTTTACTATCTCCTGGAGTTTACTCATATTCATGTCCCCTGAGTTGGAGATGCTATCCGACCATCTCCGTACAGAGTTTACAGACACATCAGAAAGACAGCCCTCTCACTAGAGCTGCTGCAGGTCTGAGCAGACTCAGGGGTAGGGGGGAATCTTTTAAAATAGATTTAATTCTTCTTTTATTGCCTGCAAAATGTTCATGGGTTTACTTTGGCCTTTGAAAAGTCTTATGACATTCTTTTCCCCCCTCCGACTAAGTTTAATTCTGCTTGCATACTTAGAGGAAGATGAAATTTTAATGATGTTTGCAAATTTTTTTAACACTTCAGTATTTTTCTTTTTCATGTTCTGCTTTTTATGTGGTTGTGTTTTTGTGAAGCCTTTATTTTTGATATGGGATCCAGTGGTTCCAGATTTGCTTAAAGAATCGGATCATGTGATCCCAGAGAAAGAATGAGCTGAAACACTCACAGTCCACAAAACAGCCCCAAGTTGGCTGTGGAAATGGGGTATTTTTAAGGCCAAACCACCCAAATTATGGAGTTTCTGTTTTGAACAAGTGACTTTCTTTTTGTTCTGTATTAGTAGGGCTAAATAAAGTATGCTTAGTTAACACAAGGAAAGGGACTATTTGCTTCAAGATTCTTAACAAAAGAAGAAAAATAACATTCAAAAAGCTTCAGCAATCTCTTATTGACAATAAATTGAAAAGAAAAATCTCTTTTCTTGGATGCTGAAAAAGAACTGAAGATTTCATGAAGGATGTTTTTAGTGTTTTCAGATTGGGAAATGTTGCACTAATAATGACTCCGAAAGCCAGCCTCCACACTGAGTTTTTACTAATGCACGTTTCCTGCAAGAAAATCTGGAGTCTGTGTTTTGCACAACGAAGAGAATTAAATTAGGAGTTTTCAGATGTTTTGAGGGTCGCTGGCTGCACTGCTTTTAGTGACTGTTGGAAATCGGTCGTGAGTCTTCCCAGCAATGTCTCTTCCTGGCACTTCTCGGAGGAGAGGCTGAGAGGCTGTTTCCGGGCTGGTTGTCACCACTTGAAATGAGGCACTCTGAGGTGCACTGATATGGGTATACTCTGTGTGATTGTACTCCCCGGTGAGGTCTGAAAACCATATAGCCAACAGCTGTCAGTCAACGTTACTGAAGTGCAGTTTATTCCCAGGAAACAGTATATGTCCAGGTGTGCATCTGATGAGCTGGGCTTGGCTAAAGCTGCACAAAGGCCGGGGGACAAACAGGACACCGACATGTGAACCCTCCCCCTGCTGGCCCCTGGGCCTCCTGGATCCTGCCCCCTGAGTGACCACAGTCCTGCTGTTTGAGGCTGTGGTTCAGTTAGAATTTTCTAGCATTTCCTATAATGGAGTCGTACTGAGTCTTCTGTTGGTATGATGCTTGGAGACCCACACGTGGTGCTGTTGCATCAGCTGTCAGGTCCTGAGGAATCCATGCCATGGAGACACTACAGTTCATTTATCTTTTCATCTGTTGGCGCAGTTGAGGCTGAGTCCAGGTTTTGGTGATGATGGACATTCACGTACATCATTTGTGTGGACGTAATATTTTAAGTTCTTTCTGTAAGTAGTTAGGTGTGGTTTGCTAGGTGCTGTGGTGGGTATATGTCTAACTTTTTAGAAAGAGAACATAGTGTAAAGCATGAATAATAAATGACCTGAACTAGGAGATGGCAGTCCTCAGGTGTCCTGTGGGCTGGCAGACAGGAGCTTTGGAGACGAGCTCTTGGCTTGTCATGGATTTGACGTTGGCAGGTGGGTGACTCAGGCATGGAGGCAGGAAGCTTGGCTGCAGGGCTGTGGGGGGGTGATGGAAGTATGAGCTGCTGCTTGGCTCACATCTAATGATGACTTGGGTGGTTAGGCCATCCATTTAGGCTGTTTCCTCATCTGTGAAGACCCTTGAAGTCATCATCGAAAACTCTCAGCAGGGATGGTCATTGGGCACAGAGCATCCTAGGCGAGCATAACCCGATCACAGGCCCACGTCCCACCAAGCTCTGTCCAGCTTTTGTCTCACCATGTAGCAGGCGCTGGCGGGGGAGGCTGGCTGTGAGCTCCCCACGGGATGCAGATGTCCTTGGGGCCGCCGGGTGGTCAGGGCAGCAGCACATCCAACTCCCGTGCCCCCACTGACGTGTCTTCTCTGCAG
Seq C2 exon
ATCCCTGCTCACAGGACTCTACCCTCCCACGTCCGGGACCATCACCGTCAATGGCAGGAGCCTGCAGAAGGACCCGTCTGTGGTCAGGGCGGAGCTGGGGGTGTGTCTGCAGTGGGATATCCTGTTCGACCGCCTCACGGTGCTTGAGCACCTGATGCTCTTTGCCTCCCTGAAGGCACTGCGGGGGACTCGCCAGGAGCTGCGTGAGCAAGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003531:ENSBTAT00000061018:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.4=44.3)
A:
NA
C2:
PF0000522=ABC_tran=FE(49.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]