BtaINT0011110 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61895317-61896069:+
Coord C1 exon
chr19:61895317-61895455
Coord A exon
chr19:61895456-61895978
Coord C2 exon
chr19:61895979-61896069
Length
523 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
ACGCCAATCTCTCTTTGCAGATA
3' ss Score
10.76
Exon sequences
Seq C1 exon
GTGCTGCTGTTGGACGAGCCAACAGCTGGAATGGACCCGTGTTCTCGTCACATTGTCTGGAATCTTCTGAAACACAGAAAAGCGAACCGGGTGACAGTGTTTAGCACTCACTTCATGGATGAAGCCGACATTCTTGCTG
Seq A exon
GTGAGATTTTTTACTTGCTTTTTTAAAGGATGAGGTCTTGGGGCCAAATGGGAATTAGACATAGAAATGCTAAATTCTGAGGAGTAAGTAAATTGTGCGTTTTTTACCAAAAAGGTATTATTATACTGCTTTTAAAATCACATGTTTTTGTGTTGGGGGCGAGCCCCTGACCCTCCAGGATCGGTAATCTGCCACAAAAGCTTACAGGACCCCACACAGTCCCACTCCCAGCATGAGTTACTACAGTGAAGCTGACAGGGTACAGGGCAGGGTCAGCAGAGAGCAGAGGCTTTGCTGACCCTGTGTGGGAACCAGACACACTTCCAGGGGGCCCCTCCCACAGAATCGCCCAGGATGCACGCAGTTCCGCCGTGTGGGAAGTTGTTTTAACAATGTAATGATAATTAATGTGATAATTTACCATATTAACATTGGTGTCTCATAGGATAATCCAGAAAATGCAAATACTAGTTATTAATGCTGTCACAGGTGGTAAAACTGAAACGCCAATCTCTCTTTGCAG
Seq C2 exon
ATAGGAAGGCTGTCATATCACAAGGAATGTTAAAATGTGTTGGTTCTTCAATTTTTCTCAAAAGCAAATGGGGAATTGGCTACCGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747:ENSBTAT00000003563:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGCTGTTGGACGAGC
R:
CTCAGCCGGTAGCCAATTCC
Band lengths:
230-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development