Special

BtaINT0011114 @ bosTau6

Intron Retention

Gene
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61900397-61901361:+
Coord C1 exon
chr19:61900397-61900598
Coord A exon
chr19:61900599-61901191
Coord C2 exon
chr19:61901192-61901361
Length
593 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
3' ss Seq
GTATTTTTTTTTCCTTTCAGGTT
3' ss Score
12.91
Exon sequences
Seq C1 exon
ATTACAGCGTGTTTTCTCAGCAGCCGCAAGAGGAAGAGTTGGATTCAAAATCCTTCGACGAGATGGAACAGAGCTTGCTTATTCTCTCCGAAAGTAAGGCTGCTCTGGTGAGCGCCAAGGGCCTCTGGACGCAGCAGGTGTTTACCATCGCCAGGTTTCACTTCCTCAACTTGAGACGCGAAAGCAAGTCCCTGAGATCTGT
Seq A exon
GTAAGCACAGGCACTCTCCTGCCCGAGGAGCTGGGGTTTTTTCAATTTAAGATTTTTCTTTCTTTTTCTTTTTTTATTTTTTAATTGAAGGAAAATTGCTTTGCAGTGTTGTATTGGTTTCTGCTGTACCACAGCCCGAATCAGCCCTAAGTATACATAAGTCCCCTCCCTCCAAGCCACTTTGTATCAGCCGTAACAGGAACACACTGAGTCACTTTTGTGAGGTGGGAGAGCCTTCCGCCTGTTGCACAGAGCAAAGTGAGTCAGAAACGCGAGTAATGCTAGTAACACATATCTGTGGAATCCTGAAACATGGCACAGATGAGCCTGCTCACAGGGGAGGAGCAGAGGCCCAGACGAGCCTGCACAGGGGAGGAGCAGAGGCCCAGATGCAGATGACGGGCCTGTAGACGCAGGTTGGTGGGGGGCGGCAAGGAGAGAGTGGCCCCGACATCACGTACTCTCATGGGAAGCAAAGAGCTGGTGAGAAGCTTCTTTTTCAAATGAGTACCTTTTAACTGTCATGGAAAGGAAGATTATTTTGTATATTTACATGTTAATATGCCTTCAACTGTATTTTTTTTTCCTTTCAG
Seq C2 exon
GTTGCTCTTACTTTTAATATTTTTCACAGTTCAGATTTTCATGTTTTTGGTACATCACTCTTTGAAAAATGCTGTGGTTCCCATCAGACTTGTTCCAGACTTATACTTCCTCAAACCCGGAGATCAACCCGATAAATACAGAACCAGTCTGCTCCTTCAGAACTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747:ENSBTAT00000003563:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF126982=ABC2_membrane_3=PU(1.4=7.4)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(15.5=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTCAGCAGCCGCAAGAG
R:
AGTTCTGAAGGAGCAGACTGGT
Band lengths:
355-948
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development