BtaINT0011118 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61907102-61908834:+
Coord C1 exon
chr19:61907102-61907239
Coord A exon
chr19:61907240-61908720
Coord C2 exon
chr19:61908721-61908834
Length
1481 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACTCTGAGGTTGTCTTTCAGGAA
3' ss Score
7.18
Exon sequences
Seq C1 exon
GACTATGTTTTTACTGCTGTTTTCAACAGCTCTATGGTTTACTCTTTACCCGTGTTGATGAATATCATTAGTAACTACTATCTTTACCATTCAAACGTCACTGAAAGCATCCAGGTCTGGAATACCCCATTCTTTCAG
Seq A exon
GTGAGCAAACGTGTAAGAGTGTGTGTGTGTGTGTGTGTGTGTGAAATAACCAGTGATAATAACAAATGAAACCTGTAGACGTTCATCTTGTGATGTCTACTCTTCTTAAAACCTGAGTTGGGGGTGGTTCACATCCCGGGTCTGGGGTCTGCTGCAGGACCGGCTTTGCTGAGCGTGGTTCTGAGCAGTTTGTTTGGGGCACCAGCTGGTTACCAGGTTGTCTGAAGCATCTGCCGTCTGTGCCTGGACCCATGGGCCTGAGGGAGCCACAATCCACCCTGCTGGGAATATGAAGCTCCTGGCTCCACCGGTGACTGAGCTTGGGCGTGACTTTCCTAGTAGAAAAGAGGAGTCTCCAAGATGCCTGCTGGCTTATAGTCCAGGCATCAGTGAAGACTTTGTGAGAGTCACATTCATTGCTAGAACCACTCGGGCACAGGTTAACTGCACTTCACGTGCAGTATTATTTTTAAATAAATGGTGAATGTTAATTAATATGCTATATTATCCTGTATACATCTATAAGAACACAGAAGTACAATAATTTTCCCAGGATCACACAGCTATTTAATCAGCACCAAGTTGGTGATGAAAGTGAAAGAGCAGAGTGAAAACTTGGCTTAAAGCTCAACATTCAGAAAATTAAGATCATGGCATCCGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTAGAAACAGTGGCTGACTTTATTTTGGGGGGCTCCCAAGTCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTATTCCTTGGAAGGAAAGTTATGACCAACCTAGACAGCATATTAAAAAGCAGAGACATTACTTTACCAACAAAGATCCATCTAGTCAAGGCTATGGTTCTTCCAGTGGTCATGTATGGATGTGAGAGTTGGAGTATAAAGAAAGCAAGCGCTGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGCCCACCCTAAAGGAGATCAGTCCTGGGTGTTCATTGGAAGGACTGCTGCTGAACCTGAAAGTCCAATACTTTGGCCACCTCATGCGAAGAGCTGACTGATTTGAAAAGATCCTGATGCTGGGAAAGATTGAGGGCAGGAGGAGAAGGGAAAACACAGGATGAGATGGTTGGATGGCATCACCGACTCGATGGACATGAGTTTGGGTAAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCTGCGGTTCATGGGGTCGCAAAGAGTCGGACCCGACTGAGCGACTGCACTGAAGTTGGCACTGTAGCCACTGCATGGTAACTACTCTGCACCTGTCTCTTCACAGAGACCTTGTCCAGGGCTGGTACCCTGATGTGTTTCTTCAGTTCTGATGGGCTCTTGGAAAGTATTTAGTAACTTGATATAAAGTGGTCCTCCATTCTGTTTCTCACTCTGAGGTTGTCTTTCAG
Seq C2 exon
GAAATCACAGACATCGTTTTCAAAATCGAGCTGTACTTCCAAGCAGCTTTACTTGGGGTTATTGTTACCGCAATGCCTCCTTACTTCGCCATGGAAAATGCAGAGAATCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747:ENSBTAT00000003563:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.3=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(10.1=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGTTTTTACTGCTGTTTTCAAC
R:
GATTCTCTGCATTTTCCATGGCG
Band lengths:
246-1727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development