BtaINT0011129 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61917540-61918177:+
Coord C1 exon
chr19:61917540-61917715
Coord A exon
chr19:61917716-61918101
Coord C2 exon
chr19:61918102-61918177
Length
386 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
TCATGCCATCTCTTTTGCAGAAT
3' ss Score
9.9
Exon sequences
Seq C1 exon
GTCTTCCTAGGAGACTACTCTCCACACCCAGCTGAAGACGACGACTCCGTGAGGTGTATGGGCTACTGTCCCCAGATCAACCCCCTGTGGCGAGACATCACCCTGCAGGAGCACCTCCAGATCTATGGAGCTGTGAAAGGGATGAGAGCCAGTGATGTGCAGGAGGTCACAGATCG
Seq A exon
GTAAGGCCCCGCCTTCAGCACCCCCTGTCACCTGCGGAAGGTCATGACACACAGTTTCAAAATTTCACAACAGGCATTTCCCTGGATCATAGTTTTTCATGGAAAAAGATCATTACTTTTCCATATATTCTTTTACCAACTTATGACAGCTATGAAAATGAAAACACTTACATTTCTGAATACAGAATAAATGTACTTATGAATTGCCATGAAACGTATTTTAATTTAAAGCGAAACTTTTAGTCATGATGTTGATTTATTTGAAGTGAGCTTCCACCAACTTATCTGTTTTAGGAAGAAAAAACAGCCTCAGGGACCACAGTCTGTATTATTAATTGTATCTGTGGGTATTGTGGCATGCTCATTTCATGCCATCTCTTTTGCAG
Seq C2 exon
AATAACAAATGCACTTGATCTAAAAGAACACCTGCAGAAAACAGTGAAGAAACTTCCTGCAGGAATCAGGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747:ENSBTAT00000003563:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(39.7=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACTCTCCACACCCAGCT
R:
CTTGCGCCTGATTCCTGCAG
Band lengths:
240-626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development