BtaINT0012508 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016158 | ACAN
Description
aggrecan [Source:HGNC Symbol;Acc:HGNC:319]
Coordinates
chr21:20847583-20862137:+
Coord C1 exon
chr21:20847583-20851653
Coord A exon
chr21:20851654-20862023
Coord C2 exon
chr21:20862024-20862137
Length
10370 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TGGCCCTTGGTTTCTTGCAGACA
3' ss Score
8.98
Exon sequences
Seq C1 exon
GGATCCCTCCTACATGGCCTCCCACTGGAGAAGCAACAGAGGAGCACACAGAAGGCCCTTCTGCAACGGAAGTGCCCTCAGCCTCAGAGAAGCCGTTCCCTTCAGAGGAACCATTCCCCCCAGAGGAACCATTCCCCTCAGAGAAACCATTCCCCCCAGAGGAACTGTTCCCCTCAGAGAAGCCATTCCCCTCAGAAAAGCCGTTCCCCTCAGAGGAACCGTTCCCCTCAGAAAAACCATTCCCCCCAGAGGAACTGTTCCCCTCAGAGAAGCCAATCCCCTCAGAGGAGCCATTCCCCTCAGAGGAGCCATTCCCCTCAGAGAAGCCATTCCCCCCAGAGGAACCATTCCCCTCAGAGAAACCAATCCCCTCAGAGGAGCCTTTCCCCTCAGAGAAGCCATTCCCTTCAGAGGAGCCATTCCCCTCAGAGGAGCCATCCACACTTTCAGCCCCAGTGCCCAGCAGGACTGAGCTGCCAAGCTCTGGGGAGGTGTCTGGGGTGCCCGAAATCAGTGGTGACTTCACAGGCAGTGGAGAAATTTCAGGACACCTAGACTTCAGTGGGCAGCCCTCAGGGGAAAGTGCAAGTGGACTGCCCTCTGAAGACCTTGACTCCAGTGGGCTCACCTCTACAGTGGGCTCAGGCCTGCCTGTGGAAAGTGGACTGCCTTCAGGGGAAGAAGAGAGAATTACATGGACCAGTGCTCCTAAAGTTGACAGGTTGCCCTCTGGGGGTGAGGGCCCAGAAGTTTCTGGAGTAGAGGATATCAGTGGACTTCCTTCTGGAGGAGAGGTTCATCTAGAGATCTCTGCCTCTGGAGTAGAGGACATCAGTGGACTTCCTTCTGGAGGAGAGGTTCATCTAGAGATCTCTGCCTCTGGAGTAGAGGACCTAAGTAGAATTCCTTCTGGAGAAGGTCCAGAAATCTCTGCCTCTGGAGTAGAGGACATCAGTGGACTTCCTTCTGGAGAGGAAGGTCATCTAGAGATCTCTGCCTCTGGAGTAGAAGACCTCAGTGGAATTCCTTCTGGAGAAGGTCCAGAAGTCTCTGCTTCTGGAGTAGAGGACCTTATTGGACTTCCTTCTGGAGAAGGTCCAGAAGTCTCTGCTTCTGGAGTAGAGGACCTCAGTAGACTTCCTTCTGGAGAAGGTCCAGAAGTCTCTGCTTCTGGGGTAGAGGACCTTAGTGGACTTCCTTCTGGAGAAGGTCCAGAAGTCTCTGTTTCTGGAGTAGAGGATCTCAGCAGACTTCCTTCTGGAGAAGGTCCAGAAGTCTCTGCTTCTGGAGTAGAGGACCTCAGTAGACTTCCTTCTGGAGAAGGTCCAGAAATCTCTGTGTCTGGAGTAGAGGACATCAGTATACTTCCTTCTGGAGAAGGTCCAGAAGTCTCTGCCTCTGGAGTAGAGGACCTCAGTGTTCTTCCTTCTGGAGAAGGTCATCTAGAGATCTCTACCTCTGGAGTAGAGGACCTCAGTGTTCTTCCTTCTGGTGAAGGTCATCTAGAGATCTCTGCCTCTGGAGTAGAGGACATCAGTAGACTTCCTTCTGGAGAAGGTCCAGAAGTCTCTGCCTCTGGAGTAGAGGACCTCAGTGTTCTTCCTTCTGGAGAAGATCATCTAGAGATCTCTGCCTCTGGAGTAGAGGACCTCGGTGTTCTTCCTTCTGGAGAAGATCATCTAGAGATCTCTGCCTCTGGAGTAGAGGACATCAGTAGACTTCCTTCTGGAGAAGGTCCAGAAGTCTCTGCCTCTGGAGTAGAGGACCTCAGTGTTCTTCCTTCTGGAGAAGGTCATCTAGAGATCTCTGCCTCTGGAGTAGAGGACCTCAGTAGACTTCCTTCTGGAGGAGAGGATCATCTAGAGACTTCTGCTTCTGGAGTAGGGGACCTTAGTGGACTTCCTTCTGGAAGGGAAGGTCTGGAGATCTCTGCTTCTGGAGCTGGGGATCTTAGTGGGTTGACTTCTGGAAAAGAAGACTTGACTGGGTCAGCTTCTGGAGCCTTGGACCTTGGCAGAATACCTTCTGTAACTCTAGGAAGTGGGCAAGCTCCAGAAGCAAGTGGTCTTCCTTCTGGATTTAGTGGTGAGTATTCTGGGGTGGACCTTGAAAGTGGCCCATCCTCTGGCCTTCCTGATTTCAGTGGACTTCCATCTGGGTTCCCAACTGTCTCCCTAGTGGATACTACATTGGTGGAAGTCGTCACAGCCACCACAGCAGGTGAACTAGAAGGAAGGGGAACCATTGACATCAGCGGTGCTGGAGAAACATCTGGGCTGCCCTTCAGTGAGTTGGACATTAGTGGAGGAGCAAGCGGACTCTCTTCAGGAGCTGAACTCAGTGGCCAAGCATCTGGGTCTCCTGACATCAGTGGGGAAACCTCTGGACTCTTTGGTGTCAGTGGACAGCCCTCAGGGTTTCCTGACATTAGTGGGGAAACTTCCGGGCTTCTTGAGGTCAGTGGGCAGCCATCAGGGTTTTATGGAGAAATATCTGGCGTGACTGAGCTTAGCGGACTGGCCTCTGGACAACCAGAAATCAGTGGAGAAGCTTCTGGAATTCTTTCTGGCCTTGGTCCACCATTCGGCATAACCGACCTGAGCGGAGAAGCACCCGGGATCCCTGATCTCAGTGGGCAACCATCGGGCTTGCCAGAGTTCAGTGGGACAACATCCGGGATCCCTGACCTGGTTTCCAGTGCTGTGAGTGGCAGTGGTGAATCTTCTGGCATTACGTTCGTGGACACCAGTTTGGTTGAAGTGACCCCAACGACATTTAAAGAAGAAGAAGGCTTAGGATCTGTGGAACTCAGTGGCCTCCCTTCAGGAGAGGTGGGTGTCTCAGGCACATCTGGGCTAGCGGATGTCAGTGGACTGTCTTCTGGAGCAATTGACTCCAGTGGGTTTACGTCCCAGCCTCCAGAATTCAGTGGCCTGCCAAGCGGAGTAACTGAGGTCAGTGGAGAAGCCTCCGGAGCTGAAAGTGGGAGCAGCCTGCCCTCCGGAGCATATGACAGCAGTGGACTTCCGTCTGGTTTCCCCACTGTCTCTTTTGTAGACAGGACTTTGGTGGAATCTGTAACCCAGGCTCCAACTGCTCAAGAAGCAGGAGAAGGGCCTTCAGGCATTCTGGAACTTAGCGGTGCGCCTTCTGGAGCACCAGACATGTCTGGAGACCATTTGGGATCTTTGGACCAAAGTGGGCTTCAGTCTGGACTAGTGGAGCCCAGTGGGGAGCCCGCAAGTACTCCATATTTTAGTGGGGACTTTTCTGGCACCACTGATGTAAGTGGGGAATCCTCTGCAGCCACGAGCACCAGTGGGGAGGCCTCCGGACTTCCAGAAGTTACGTTAATCACATCTGAGTTGGTGGAGGGAGTTACTGAACCAACCGTTTCCCAGGAACTGGGCCAGAGACCCCCCGTAACATACACCCCCCAGCTTTTTGAATCCAGTGGTGAAGCCTCTGCATCTGGGGATGTGCCAAGGTTCCCTGGATCGGGGGTAGAAGTGTCATCAGTCCCAGAATCCAGCGGTGAGACGTCAGCCTATCCCGAGGCTGAGGTGGGAGCATCTGCTGCCCCCGAGGCAAGCGGAGGAGCTTCCGGGTCCCCTAACCTGAGTGAAACCACCTCCACCTTCCATGAAGCTGATCTGGAGGGAACCTCAGGCCTGGGAGTGAGTGGCAGCCCCTCAGCCTTTCCAGAAGGCCCCACGGAGGGCTTGGCCACCCCGGAAGTGAGTGGAGAGTCAACCACTGCCTTTGACGTGAGCGTAGAGGCATCAGGCTCACCTTCTGCCACTCCCCTGGCTTCTGGAGACAGGACTGACACCAGCGGAGATCTGTCTGGCCACACCTCGGGGCTGGATATTGTCATCAGCACCACCATCCCAGAATCCGAGTGGACTCAGCAGACCCAGCGCCCTGCAGAGGCGCGTCTAGAAATCGAATCCTCAAGCCCTGTGCACTCAGGAGAAGAGAGCCAAACAGCCGACACAGCCACCTCCCCGACTGATGCTTCTATCCCAGCCTCCGCAGGAGGGACAGATGATTCAGAGGCAACCACAACAG
Seq A exon
GTACAGCTGGGATCATTTTCCTTTAAGTGGGTCGGAGTGATTCAGACTGTAGCATGGTAGGAAGCAGTGTAGACTCAAGGTTCTGAGCTGTGCAGGCTTAGGCAGGTATCTTAACCTCTCTGAGCCTCATCTGTAAAACAGCAATAGTACCAGAGGAGAGTAAATAAGATATAAATATGTCGAGAACAAGGCTATATCTTTTGCACACAGTACACACTTGTAGGTTCACAATTGTTACAGTCACAGTAGAGTTCCATCACACAAACATTTATATGTGAACTCAACTATCTTACTCGGCACGAGAAGTACTGTTTAGATAGTGCTGGAAATTCTTCTCCTGCCCCTGGCTCATGGAATGAGCATGAGAAGAGAGAATGAATCTGCTGATGACATTTATGTGCCAATACTTACTTTGTGCAGGGTTAAAACCTGCACAGTTCAAGTTAATATGAAGCATCACTCCAGCTGTGTCCTGCCTTTGGACCCTGGCTCCTCACCCCGACCCTGTGCAAGTAAACCCTCCTCTGTACTGTAGTGATGGTCTTGCCTTGACACAAACCCAGAAGCTTCTGGTTTTCCTTTATTTTCTGGGGCCCCTTGCATCCCCCTGTGTACTGAGAGTCCAATCAGAGAATTCAGCCCCACCAGAAGCAGGGGCTCAGGAGGGAGAGAGTCCCCAGAAATCATGTTGACCCAAAACCAGCCTTGTGGGTTTCTGTGGCCTGAGGCCCCACCCTGGAGGTCTTGGAGGCTGCGCTGTACCCCAGGCAGCAACATTCTTGATGCCCAGCCTCTCCCTGCGGGTTGCAGCCTCTACCAGTTCCTGTGCCGAAAAGCCCTGTAGCGCTGGGACCTGCCAGGAGACGGAGGGACACGTCATATGCTTGTGCCCCCCGGCCACACTGGCAAGCACTGAGACGTAGGTAAGACCCTCGGCGGCCATGGGGGTGCAGACAGAAGGGTCGGGAGGAGGCGTCCAAGGTCACCTGAGGTGCAGGCTTCTTGTCACACTGGCGTAGAAGAGTACATAGTGATGTGTTGGGGTAGCAGCCACAGGATAAACATGGCATGTCTTTCTAGAGGGTCTGTTCTGCATGATGGTTTAGGAGAAAAAAGTCATTAAATTGAGAAGTAGTTCTTTTTTTTTGTCAAGCCAATGATTGTTTTATGAGCAAAATCCAAAAGGTGCTTGAATTTTGAAGATCAAGCTGGAGACTTCAAAAGAATGTTGAGCTAGGGAGTTATTGAAGAGAGCCAGTCATGCCCCGAAGTCCCTGGGAGGGAAAGTCCGAGGGTAGGCTGTCTTGCATCATCCAGAGTGGACCCCTTTGGGAAAGCCCCTAGAGTCCCCTCTATGCTTAGGCCTGGGTAGGGTTTGAGTACCTTTCTTGCCTTAAATGAGATAACACAGATAGAACTCATCACTCCCAGCTCCAGGATTCATGGCTGCAGGTCAGCTATGACCCAGCAGAGCCCCACCCTTGAGCACCCATCATGCTGGGGCCTCTGTTTGTCCAAGGAGCTTGTGAGGTAAGTGAGGAGCCTGGGGGATCCTCTGACTGGAGGTGGCTGCCAAAATGAGATGGTAGAATCTATGTGTCACTCCCGGAGCACCTGGAGGCCTGTGGCTGTGAAGACATTTCAGCTCATCAACATCACCACCCTTGAGGGAAGAAATGCCCGGTTCCCTCCAAGCTCAGATTCTTGGGTTAGCTCTCTGCACTGCCTCCACGTCCTTACCCCAACTTGTGTCTGGAGTTAGAACTCCGAGACCCAAGGCCTTCCGTTAAAGGGCTTCAGTCCTAAGACACATGCAAAATGCCTTTACATCCTACACAAAGGTACATTAATATAGATACCAATATATATGCAAAATAATACAGCAAGTCCCCTCCATGTAAATGAGTTCTGTACAAAGACCACATTCATAAGTCCAGTTTAAGTCCAACAAAATTAGCCTAGGTACCCAACTAATACAATTGGCTATAGAGTGCTGTACTGTAATAGGTTTATAATACTTTTCACACAAATAATACATACAAAACAAACACAAAAACAAAGAAAACATTTTTAATCATACAGGACAGTACCTTGAGAAGTACCTTGAGAAGTCTAACACTGGCATACAGGCGCTGGCATCGAGTGAACAGGCAAGAAGAGTTACTGACTGGAGGAGGGAGAGGAGGTGGGAGATGGTAGAGATGAAGGGTCGTCAGCAACAGGAGATGGAGGGCAAGCTGCCGTGTCACTCATGCCTGATGCTGAGGGCACGGGTTCTGGTTCCTTGCTGGAACCACATGTACGTTTGCATCTTTGAAGTTTGCAACTTGAAGGCTCACATGTAGGGAAATGACTGTGAATGAGTTATATGCTCTTAATATATATGCACTCTTAATATAAACCTGCTATATACTTGGCACTTACACAGGAAATGTGTGTATATATATATATATATATATATATATATATATCAGATCAGTCGCTCAGTCGTGTCCGACTCTTCGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTCAGACTCATGTCCATCGAGTCAGTGATGCTATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCTTCCTGCCCCCAATCCCTCCCAACATCAGAGTCTTTTCCAATGAGTCAACTCTTCACATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAGTCCATTCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCATCAGCGCTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAAACAGGCTCTAGGGTGTATACTATTCACTCTCTTCCCCTTTGGGATCAGCCTCTGCCCACATGTGCGGGCCGTGACTGAGAACACTATAGGCCTCTGTGGCCAGAGAAGGTTGGTTCTCCTAGGAAGGTCCTGGCCTTTCTACCAAGGGGACAGTGCTTCCACTGAGCCATAGTGACCCCAGAGCTGTAGACACACCCCTCTGTCTCCCACCTCCACAGGGAAGGCAGAGCACTACCTCTGTCCTGGGAGAGACCACCGCTGATGAAAACGTGGAAAGACCTAGTGTGCTTTACAGCACACAGATTCCTCAGTTGGCAGTAGAAGTGACTCTGTCTGTCTGGTAGACATCTTGCCAGGTGTGCAGACACGTCCCCCCTCCTGGGTCTGGGTGTGCAGTAGAGAGCAGCAGGGCGCCTGTCTTGGGTGAAGTGCTATGGAGCTCAGCTCTGTCAGCCAGCCCAGCCTGGGTCAGCGAGGAACAGACTCAGGGCCCAGCAGGGCTTCTGGGATGGGGGCCGCCACCAGGATCAGAGCCCCCTTGCTCTCTTTTAGTATCTTCTGACACCTCTGTCCATTCTTAGCAACTCCTTTTCCAACCTGATACTTGAAACAAAAATGGAATACTGGTATCAGAAGTCACACAGCAAGGCTCGCGTCCTGGCACCTCTGAAATTAGAAGTAGGTGACAATGGACCTTAGCTAATCTGCTCTAAAGACACCTTTTCTTTAATCATGTATATTTCCAATGGGCGTTCCTTCCCGCAGTTTCTTCCCAGGCAGCTCTGAGCCTGGTAATCATGTCCATTTGAAAGTGCAGCCCCTAGAGGTTAAGCAGTTTGCCTAACTCCGCTGAGTGAGTCCAATCAAGAACTGGGGTCTTCAAAACTCTTCTGTTATGTGCATGTGGTGAGGGCGGCGGATAAGAGTGCAAAACACTCTGTAATTAATGCATATCCCAACCAATTGGCTCAGACGGTAAAGAATCTGCCTGCAGTATGGGAGACCTGGATTCGATCCCTGGGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATCCTTGCCTGGAAAGTTCCATGGACTGAGAAGCCTGGCAGGCTACATACAGTCCATGGGGTCGCAAAGAGTCAGACACACTGAGCGACTTAACTAACCAACTGGGTTAAAAGATGATTACAATGACCAGTTGAGGAAACACTTTTATTATTTCAATTAACAATTGAATTAGATCTATTCAGTAATTACCTAATCAATTGGCCTTTTAGTTTGAGTTATATTGATAAGCATTATTTTAATAGCATATTACTAGTTCTTTTTCCGGGATATAATTTCCTGGTGGTAAAGATGGTACAGAACATGCCTGCAATGCAGGAGACCCAGGTTTATCCCCTGGGTCAAGAAAATCCCCTAGAGAAGAAAATGACTACCTACTCCAGTATTCTTGCTTGGAGAATTTTTTGGACAGAGGAGCCTGGCGGCCTAGAGTCCATAGGGTCACAAAGGGTCACATGACTGAGCGACTAACAATTTCTAACACTTTTTGTATCAAAAACATTTGTGTGCTAATATCCAAGAAATGAATTTGTGATTTAAAAAAAAAGAATTGAGGTCTTCACTGCTTAACACATCCAGATGAATAAGAAATCTTCTCTTGAACATAACAACCAGTTGTTGGTCTTAAAAAGCTAGAAGCTAAATTTCAGGGGAACCAGAATTAAGAGTGGCTGTAGTATCACATTGGTTCAACTAGAGACAGACGAGCCCTCGCTACCTCATTTGTAAACAGTGTCAATGATGGTGGTTCTGTGCTTTAAGACCTAGTGCCTCGGTCCCACTCGTACAGACTCTGATTAGAATAGTCCTGTGGCCTTGGCACTGGAGTTTTTTAAACTCCCAGGTGACTCCAGTGTGCAGGCAGAGCTGAGAAACACTGCTGTGAGGATTAAGATCATCCATGTACATCTTACAGGTTCCCTTTTCTGTCTCTCATGCCACTGATTACGAAAAGCTTTGTCATCTCTAAAGAGTGAGTAGTAAGAGTCATCCACGTGCAAAATCTGGCATCTCGGTACCCACCACGATACCCCTGGGGTCCCAAGTCACTCCTGTTCAATTTAACTCGAGACTTGGCGCTTCCAAAAGGACTGCAGATGGTGTCCAGCATCCATAGATCACCCACCTGTCATGTGGCTCTAGAACCAGGAACTACAGGTTGTTAAAAGGCCTTATAGATCTGTGTCATCTTGTTTAGTCAGCATTCTGTAAACAGGTTCTTGATAAATTATTAATCTGTACTCTTTACAGCAAAATAAATGCTTAATGAATACTCAGATTCTTTAGCAAGGCTTCCCAGGTGGCACAGTGGTAAAAAAAAATCTGCCTGCTAACGCAGGAGACACAAGAGACGAAGGTTCAATCCTTGGTTGGGAAGATCCCCTGGAATAGAAGATGGCAACCACTATTGCCATACTAGCCAGCCTTTTATCTTCCCTGGTGGCTTAGAAGTTAAAGCGTCTGCCTCCAATGCAGGAGACCCCGGTTTGATCCCTGGATCGGGAAGATCCCCTGGAGAAGGAAATGGTAACGCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACGGAGAAACCTGGTAGGCTACAGTCCACGGGGTCACAAAGGGTCGGACATGACTGAGCGACTTCACTTACTTACTTACTGCCATACTGGAGATGGCACCCGCTCCAGTATTCTTATCTGGTAAATCCCATGGACAGAAGAGCCGGGAGGGCTACAGTCCATGAGACCACGAAGAGTCAGACACGACTAGCAGCTGAGCACTACTGCTTCTAAAGGTCCTTTGGCAGTTAAGCACTGAACTGGAGAGTTCCCTGGCAGTCCAGTGGATAAGACTCTTCGCTTCCAGTGCGGGAGGTGCAGGTTTGATACTTGGTGGGGGAACTAAGGTCCCACAGGCCGTGAGATGTGGCCAAAAAAAAAAAGCAAGACTATCCTATTCCTATCGACTTAAAAAGCAGAAGCACTCTCCTCACTTCCATTGTTAACACAGTATTTCTTGTAGGAATTAGATTTCTGATCCTGACGTTTCAATCCTGGCAGCTCCTTAGAATCACCTGGGAAACTTTATTATTTTTATTTATTTATTCATTTTTGGTTACACTGGGTCTTTGTTGCTGTGCATGGACTTCCTCAAGTTGTGGCAAGTGGGGGCTACTCTGGAGTACTCGGGCTTCTCATTGCAGTGGCTTCTCTTGTTGTAGAGCATGGGCTTTAAGCACACAGGCCTCAGTAGTCATGGGTTTAGGAGTTGTGGCACACCAGCTTAGTTGCCCTGTGGCATGTGGAATCTTCCCAGACCTGGGATCGAACCCACATCCCCTGCACTGGCAGCTGGATTCTTATCTATTGTACCACCAGGGAAATGCTGGACTGCTTTTAAAAAGTGCCATACGTGGGCCCCACCCTGAGCCATTCTGATTCACTTGGTCTGGAGAGGGACTCTGGTGGTGTTGGTAATTTTTTTTTTAATCTAAAAATTCACTATCACAATGATTCTAATGGGCAGCTAAGTTTAAGAAATCAGATCTCACATTCAATTTCCCAGCAATCACTGGCATTGCCTGGATTTCTCTAAACTCCATGGTTAGAAGGGCATGAACTTAAATTTTAATCAGACTCTTTTCTGTTTTATTGACATTTTTCACTTTGTGGATTTGAGATTCTGATCTATAATCCGACACTGTCTCTTCCCCCAGTGGGGTGATGTTTGAATTCCAGTGAAACCTTATCCCTGGGGATTGGGGGAAATGCTTTCAAAGCAAGTAAAAATACAGGGTTATAAGTCAAGATACAAATTACATCTTGACATAACCAAGAAGTCCACAGGCAGATTTTAACAGGCAACTAATTGAATTTAAGAAGTAGGATATTAAAGTTGCATCCAAGATCAACCTTTAAAATGTAAAAGACTTGACAGTATAAATAACTATAACTTTAATCATGTTTGTTTTTAAAGCTAATTGGAACTGATAAATATGCTGTTATAGTCCTTCTCCTGGAGAGGGAAATGGCACCCTGCTCCAGTGTTCTTTCCTGGAGCATTCCCTGGACAGGGGAGCCTAGCAGACTATAATCCATGGGATGGCAAAGAGTCAGACACGACTGAGCACACACACATAGTCCTACTATCAGTTGTGATACACCAGAGAGCAAGTATTTATGTTCAATTCTGTTCATCCTGATTGATCCTAGGTCTTTGCAGGGTGTGGAGCATCTGTTGAGCTAAGAAATTGCCTCTGTGCTTCTTGAGGGGATTTCCGCCCCCCAATCCTTGTTCAGTAGTCATGTCCAGGGTCATCACATATAGCCGCACAGGTTGTGCACTGAACAACTTGAGGGGTAGCACTCATACCATGGTATTTATGAGTGGCAGCCCCTTTGGTTGGATATCACTTGAGTTAAAGCACCTGCTGTCACTTCACTCCACTTTTTCTGTAAACAAAATAAACTCTAACGTGGATGTCTTGAGTTCTGACCCAGGCAACAGCTGGACAAGATCTATTCAGGGTAGAGGCCTGAGTTCTCCAATTCAGAGGCCAAGGTGATTATTTACAAGTATCTTTATTCCCATCACCTTTACCAGGGGTTCTTAGCTAGCGACATCACTAGAAAGCCTTGTTCGGGAACAAAAAAATCTCTTTTGGTTAGAGTAGTGGAAAGCGGACTCAGAGGCCCTACTCAGTGATGACCTGTGAGCCCTTGGCTGGGGAGGCACAAATGGTAATGAGATGCTGAGATCCAGGACTCCAGTCTCTCTCTCCACATATAACAGAGACCTGACTTTCATCCTCATGGCCTAATCTCCTCCAGTCTGTCTCCCCTTCTTACCATGTGGGCAGGTCACTTCATTTGTTTTCTTATCTATAATATGACACAATGACATCCATGCTATAGGGACACTTGGAGGATAAGTGGTTGTGAGATATGGTGTCTGGCTCAGAGAAGATTCTTGGAAGATAATGGCTCCCTCTCTTTCCTCTCTTCCTTCACACAGTCTGCCCAAAGCCCTTCCCATTCTCCATTTGTTGTCACCTTGTCTGGGGTCCCCAAAGTACAGCAGGGCCCAGCCCAGCTATTCTCATGGTTCCAGAAGATAAACAATGTTCTAACTGCCTTCACTGAAAGAGGTGGGGCAAATCAGGGCCAGAATGGCTCTTCTAATCAGAGGAAAAGAAGAGGCACCACAGGCCTGAGTGACCAAAGAGAAGGCCCCACCCAGGATGTCCCACCCTCTCCGTACTGCTGACGGCCTAAGTTGCCCCAGTGCTGCTCACAGGCTCTCAGGTCTTCAGGATTATGGCCCTTCCTTCCCTCCTCATCTGTGAATCTTGGGCGCTGTATGAAACAGCTTCTGAGCCCAGGAAACTAGTTCCTTGAGTTTCAGTCCCTGCAGCCTTCTCAGATTCTGTGCCCTGGCCAAGCACAACAAAGGAAAATGCACTGTCCCAGGGCGCAGGCCACGTGGGGAGGGCAAGTGATGTAAAATAAGCCTCTGGGACCACTGGAGGCCACTGGGCCTGACCTCCCTTGGGCCTCTGCCCTCCTACCCTCTCCCCCATGGGTTGGGCAGAGGCCCCAGGGTTGATGTCTAGCTCTTCTTCCCAAGGCCCACTCCCGTCCCTGCTCTGTACAACTGCTTTAGCGCCTACATTTGCTTAATACCCCCTTGCCCAGTGCTTCCCGTCTCCCATAATGACGCTAAGGGACCAAAAGACAACAGTAGAAGCAAAAGAGCCTCCCCCAGCTTCTGCCCAGCCCACCGGCCTGACCTATTGCTGCTACTGCTGCTGCTGAGAATCCTGGTGCATGCTGGGAATCCAAGTGCATGCTGGGATTTCAGCCCATTACTCCATGCATTTTGGTTTTGCTTGGAACAGTTTCAAACTTGGAACTGTTGGTTTCTAGCCCATGGTGTACAACTCCCTGAAATGAAGTCAAGAACTTTGTGAGAAGAGAGACCTCCCTGAGGACTTGAGATTCTCAGGCCCTCTCATGGCACAAACCCAGCTCGGGTCTAGATGACATCAGCGACGCACTAGTGAAAAGTGCTTTTATCTTCTTCTAAGAGGATTGACTTTAACGGTCTAGTCTGTCCTTAAGAAGTAAGAACTAAGTCCTGGAACGTATTTAGGAAGATGCCTACGTGGAGACCACCCATCAACACATCAGGTCCTGAAGTTTGTATGAACATAGCTTTACACATCATGCTGACTTATAAGACAGTAGAATCTATTCATTCCAGAATTGTATGAATCCCCTGGGAAGAGGAGCTTCCAATACCTTTTGTCATGTTCTCAGAGGAAGGAACCCAGCAGGTGCCTTTGAAGAATGAATACAAAAAGCGTAGAAGGATCTTCTAGGTCTCTGGCTTCTCTGAAAGATACAGAAAGACTAGATAAGGAGTTCCAGTTCTCATCTTGGCTAATGGATGAAAATTTGAGGCAAAGGCCAATGACTTACCAGTATAAGTCCCACAAAGATGGACATCTTGGACCAGATGAACAGAAGGAGAGAAGAGTCTTCTGGGGAACAAGGCTGATGGATACCTGCCAGTATCCCAGGCTGGTGCTGGTGGCTTACTAAGTGCCTTGCCAGCTTCCAACACTGGGTCTCCCACTGGCCAGGATGCAGCCCTTCTAGAAATCATGATTCACTGGAGATGTCCCTGTTTTGAGGCCTTTGGCTGGAAGAGAAGATTACATGGGGAGATATTAGACTGGGTTTCTGTTCCTTCCCGCCAAGATAACAAAGTTGGCTTCATCTTTATAAGATACTCTAGACTTTTATTTACTGAAGACAAAGAAGGTTCTGCATCCAAAAAAAAAAAAATCTCATGTGAATATTCCACGCTGCCATTTTCTCATGAACCTGTACTCTGCAGACCACTTCTAGCTTGTTTGTTCTAGTACTGCATGGCCTTGTCCTCTTTCCTTGGTTCAGACTGACAGAAGAAGTTAGGAAAAGAAAGAGCTCTAACTAAGCTTCCAGTATTTGAATTCCAGCATCCTTGCTCACTGCCATGTTAAGAGCCAATTCAGACCCCAGGGCCGCTTGAAATATTCACAAGAGAAAACACCTGGAGGAACTCCAAGCTCACTCTCACAATAGGACTTTGCCTTCACAAGCCCCAGATCTCTTCACCCACTGGGAAACCTGGCTCCAATGCCCCAAGCTTGCCAATCAAGAATCACACACATGCAAGAAAACCCTTGTTGGATCTTTGGCTCAGTGCTCCAAGATGGCGGCAGCAGCAGCAGCAGCAACAGTTCTTAGGAAATCCAGGGCTGTGGAGAACCGCAGGGCTGGCCACCCATAAAGAAGCTGCAATGCAATTGAGAAGCTGGAGTTGCCGGCAGGAGTCCTAATGGTGGCCCTTGGTTTCTTGCAG
Seq C2 exon
ACATTGACGAGTGCCTCTCAAGCCCTTGTCTGAATGGAGCCACCTGCGTGGATGCCATCGACTCTTTCACATGCTTATGCCTTCCCAGCTACCAAGGGGACGTGTGTGAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016158:ENSBTAT00000021512:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]