MmuINT0009478 @ mm9
Intron Retention
Gene
ENSMUSG00000030607 | Acan
Description
aggrecan [Source:MGI Symbol;Acc:MGI:99602]
Coordinates
chr7:86242638-86256338:+
Coord C1 exon
chr7:86242638-86246120
Coord A exon
chr7:86246121-86256179
Coord C2 exon
chr7:86256180-86256338
Length
10059 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTTCCTGACCTGTGTTACAGACC
3' ss Score
9.55
Exon sequences
Seq C1 exon
GGATCCCTCCCACATGGCTTCCCACCCTCCCAGCAGCAGAGGAACACACAGAAAGCCCCTCTGCCTCTGAAGAGCCCTCTGCCTCAGCAGTCCCTTCCACCTCAGAGGAGCCATACACATCTTCATTTGCAGTGCCGAGCATGACAGAGCTGCCAGGCTCTGGGGAGGCGTCGGGCGCACCTGACCTCAGTGGTGACTTCACAGGCAGTGGAGATGCTTCAGGACGCCTTGACTCCAGTGGGCAGCCTTCAGGGGGCATTGAAAGTGGCCTTCCCTCAGGTGACCTTGACTCCAGTGGCCTCAGCCCCACAGTGAGCTCAGGCCTGCCTGTAGAAAGTGGTTCTGCCTCAGGAGATGGAGAAGTCCCCTGGTCCCATACTCCCACAGTTGGCAGGTTGCCCTCTGGAGGTGAGAGCCCCGAAGGCTCTGCCTCTGCCTCTGGAACAGGAGACCTTAGTGGGCTGCCTTCAGGAGGAGAAATTACAGAAACTTCTACTTCTGGGGCAGAAGAAACCAGTGGACTTCCTTCTGGAGGAGACGGTCTAGAAACTTCTACCTCTGGAGTAGATGATGTCAGTGGAATTCCTACTGGAAGAGAAGGTCTAGAGACTTCTGCCTCTGGAGTAGAGGACCTCAGTGGACTTCCTTCTGGAGAAGAAGGTTCAGAAACATCTACCTCTGGAATAGAGGACATCAGTGTACTTCCAACTGGAGGAGAAAGTCTAGAAACCTCTGCTTCTGGAGTGGGAGACTTGAGTGGACTTCCCTCAGGAGGAGAAAGTCTAGAAACATCTGCTTCAGGTGCAGAGGATGTCACTCAGCTTCCTACTGAAAGAGGAGGTCTAGAGACTTCTGCCTCTGGAGTAGAAGACATCACTGTTCTTCCTACTGGAAGAGAAAGTCTAGAAACTTCTGCCTCTGGAGTAGAGGATGTCAGTGGACTTCCTTCTGGAAGAGAAGGTCTAGAGACTTCTGCCTCTGGAATAGAGGACATTAGTGTGTTTCCTACTGAAGCAGAAGGTCTGGACACTTCTGCCTCTGGGGGATATGTTAGTGGGATTCCTTCTGGAGGAGATGGTACAGAAACCTCTGCTTCTGGAGTAGAGGATGTGAGTGGTCTTCCATCTGGAGGAGAGGGTCTAGAAACTTCTGCCTCTGGAGTGGAAGATCTTGGTCCTTCTACTAGAGATAGTCTAGAGACATCTGCTTCAGGAGTAGATGTTACTGGGTTTCCTTCTGGAAGAGGGGACCCAGAGACCTCTGTTTCTGGGGTAGGTGATGACTTCAGTGGACTTCCTTCTGGAAAAGAAGGCCTGGAGACCTCAGCTTCTGGAGCTGAGGACCTCAGTGGCTTGCCCTCTGGAAAAGAAGACTTGGTAGGGTCTGCTTCTGGGGCCTTGGACTTTGGCAAACTACCTCCTGGAACTCTAGGAAGTGGTCAAACTCCAGAAGTAAATGGCTTTCCCTCTGGATTTAGTGGTGAGTATTCTGGAGCAGACATTGGAAGTGGCCCATCCTCTGGCCTGCCTGACTTTAGTGGACTTCCATCTGGCTTTCCAACTGTCTCCCTTGTGGACAGTACCTTAGTGGAAGTGATCACAGCCACCACTTCCAGTGAACTGGAAGGAAGGGGGACCATTGGCATCAGTGGTTCAGGAGAAGTATCAGGGCTGCCCCTGGGTGAATTGGACAGTAGTGCGGACATTAGTGGTCTCCCTTCAGGAACTGAACTCAGTGGCCAAGCATCTGGATCTCCTGATAGCAGTGGAGAAACATCTGGATTTTTTGATGTTAGTGGACAGCCATTTGGGTCTTCTGGCGTCAGCGAGGAAACATCTGGGATTCCTGAAATCAGTGGGCAGCCATCAGGGACTCCTGACACCACTGCGACATCTGGAGTGACTGAGCTTAATGAACTGTCCTCTGGACAACCAGATGTCAGTGGAGATGGGTCTGGAATTCTCTTTGGCAGTGGACAGTCCTCTGGTATAACATCTGTGAGTGGAGAAACCTCTGGGATTTCTGATCTCAGTGGGCAGCCCTCAGGGTTCCCAGTGTTCAGTGGAACAGCAACCAGAACCCCTGACCTGGCTTCTGGCACCATAAGTGGCAGTGGAGAGTCTTCTGGCATTACATTTGTGGACACCAGTTTTGTTGAAGTGACCCCTACCACATTTAGGGAAGAAGAAGGGTTAGGATCTGTGGAACTCAGTGGCTTTCCTTCTGGGGAGACGGAACTGTCTGGCACATCTGGGACGGTGGACGTCAGTGAACAATCTTCTGGAGCAATTGATTCCAGTGGACTCACATCCCCCACTCCAGAGTTCAGTGGCCTCCCAAGTGGAGTAGCTGAGGTCAGTGGTGAATTCTCTGGAGTTGAGACTGGGAGCAGCTTGCCCTCAGGAGCATTTGATGGCAGTGGACTTGTCTCAGGTTTCCCCACTGTGTCTCTTGTAGACAGAACTTTGGTGGAATCTATAACTCAGGCTCCTACTGCTCAAGAAGCTGGAGAAGGACCTTCGGGCATTTTGGAATTCAGTGGTGCCCATTCTGGGACACCAGACATATCTGGGGAGCTTTCTGGGTCTCTGGACCTAAGCACATTGCAGTCTGGGCAGATGGAAACCAGCACGGAGACACCAAGCTCTCCATATTTTAGTGGAGACTTTTCCAGCACCACTGATGTAAGTGGAGAATCCATAGCTGCCACAACTGGCAGTGGGGAAAGCTCTGGGCTTCCGGAAGTTACTTTAAACACCTCAGAGTTAGTGGAGGGTGTGACTGAACCCACTGTTTCCCAGGAACTTGGCCATGGTCCTTCTATGACATACACTCCCCGGCTCTTTGAGGCCAGTGGGGACGCCTCAGCATCCGGGGACCTTGGTGGCGCTGTAACAAACTTCCCAGGGTCTGGGATAGAAGCTTCAGTCCCAGAAGCCAGCAGTGACCTGTCTGCTTACCCTGAGGCTGGTGTGGGAGTGTCTGCTGCCCCTGAGGCCAGCAGTAAACTGTCTGAGTTCCCAGATCTGCATGGAATCACTTCTGCCTTCCATGAAACAGATCTGGAAATGACAACCCCAAGCACAGAGGTAAACAGCAACCCATGGACCTTTCAGGAAGGCACCAGGGAGGGATCGGCCGCTCCGGAAGTGAGTGGAGAATCTAGCACTACCTCCGACATAGACACAGGCACTTCAGGGGTGCCTTCTGCCACACCCATGGCTTCTGGAGACAGGACTGAAATCAGCGGAGAATGGTCTGATCACACCTCAGAGGTGAATGTTGCCATCAGCAGCACCATCACAGAGTCCGAGTGGGCCCAGCCTACCCGGTACCCTACAGAGACACTTCAAGAAATCGAATCCCCAAATCCCTCATACTCAGGAGAGGAGACCCAGACAGCAGAAACAACCATGTCCCTGACAGATGCCCCCACCCTCTCTTCTTCAGAAGGGTCAGGGGAGACGGAGTCAACCGTTGCAG
Seq A exon
GTATGGAGTTATTTTCTCTTTAAATGTGTTTGGGATATAAGCAAGTGTAATCCAGAAGGAGGCACGATTGCTTTAAAATTCAAAGCTCAGTTGGACAATGTCAGATAATACTCCAGTCCCTCTGAGTCTTATGCATGAAGTGAGAGTAGTACTGGTGAAGAACAAATAGGATATAGATGTGAACAAAGCAAGCACTGAGCGTCATGCCGAGTTCTTCACAGCGTGACCTTGTGAAGATGAGTGACTTCCTTCCACTGGGGTTAGATCCCACTAACACTCATGCGTGGGTGTCACCGTCTGTGCCTATTTAGGTAGTGATAACAATTGTATTTGCGAACCTGTTCCCAAGTAAATGTGAGATGACAGAGTACATCTGCTAATTTATGTCCAAATATTTATTTTGTGGGAAAAAAAAACTTGCACAGTTTAAGGAACTATGAAGTCTCACATTGGCTCTGCCCTGACGCTAGACTCTGTGTTCCCAACTCATCCCAAGCCACCAAGACTTCCCAGTGCTGGTCCAGCGCCTCACCTCCACCCTCTTTCAGACACCAAGCTCCAGCAGCTTTAGATTTGGGGGACATCTTGGTCCTCCTACTGTACTGGGACACTTTCCACAATCAGAGGGAAAGTAGTCCATGTATTGGGGACTGACGGAACAGGAAGGCAGAACGCCCCCCCCCCCCGGAGTGAGCTGACGCTTAGCCATCCTCAAGGACTTGGAGCGTCTCAGCACCCGGGCATGGGAGCTCAGAGGCTGTTCTGGTCTCTAGGCAGCTCGGTTCTTGACACATATCCTCTAGGTTTTGTGTAGAGGAGTCCTGTAGCCCAGGGACATACTGGAAACATGCTCGTGGCCCACTGGCCACAATGGCAATCACTGTGACATAGGGAAGCTCTCGTTAGCTATGAGGGGGCAGACAGGTGATAGACTGACTCCTGCAGTCTCCAGAGAGGGAGTCAGGCAGCAGCAGCCTCTCTCTGCTAAGGCAGGGTCTCTCATAAAGGAGCTTTATTCCTGGGACACATTCAAAAGTGGAGAAATGAATCCTAGAAGAAACCCAACTAGAGTTCACTGCTGGCCAGGTCCCAAGCCTCAGAAGCCTTTATGTCAGACAAGAAGATTCTATGTTCTTAGATATTAATATACAAGCATATTAACACCTCACCATATAGTACAGCCTTGTACATAGCGACCATGCTTCATACTTAGCACGAACATAGTAAATACATGTGTGTACACACAGTTCAGGCTCTCCACTCTTCTCTCACTGGGGTCACTCTCTACAGTTCAGCGCCTAAAGGCACCTAACCACAAGAACAGAGAATGTGGACTTTTCTTCCTGCCCAAGAAACAATATGGCCATAAGGCTCTAATGACTAAGTGACCAAATCCCTCTACACATGGTCACAGTACTCTCAGTAACTCTTCCCAGCCTGTAAAAGTTACAAGCAAGACTTGTGACCTTAGTTGGGCATAGTGGTGCACACCTGTAATCCTAGCTCTTAGGAAGGGGGAGGGGGAGGAGTCCAGCCTCGGCTACATAGTGAGATTCTGGTGAGGGGTTGGGGAGGGGGGAGACAGAATGGACCTCAGGAGCCCCAAATTTAGTAAAAGTAGCAATAGAACTTACTTTTAATTCTTTATTCTTTCCAGGGTAATGGCTCTTATCTATTAACCCAGTCCTAGCACTCAGGAGGCTGAGGCAGGAGGATATCCTAGAGTTCCAGGCCAGCCTGGGCTACAGAGTGAGACACTGTCTCAAAATAAAAGAGGGAAGGAAGGAAGGAAGGAAGGATGGATGGAAAAAGGTAGACATTAGCAATCTGTCATAAGGACAGCCTTCCTGGCTACCTGCAACTCCATCACTCTGCCTCCATCGCTCAGATCTTTCCAAGAGCCACAAGATGCAACGTTATTCCTATGATATTTGAGTACCCAGGGGATCCTCTCCCAAGGAGAGAAACTGAATTTAGTACTAAAAGAGAACATTCAGTAGTAACTTTCGTCTTGCTTAGTTAATATTCTGTCCATAAACAAGTTCTTGATAAATTAGGAACCAGTACTTTTGACATCAGAATAAATATTAAAACCTCTTGTGGTGATACATGCTTATGATAGTCGTACTTAGAAGACTGAGGCAGGAAGATCAGAAGTTCAAGGTCAGCCTAGACTACATAGTGAGTTGAAGCCAGCCTAGGATAAATTATACCCAATCTCAAAATAGATAATAATAATAATAATGATAATAATAATAATAATAATAATAATAATTAGCTTCATGAAAGCTCCGGTTCTTAATCTGGTCCAGTTAAAAATCAGCAGCCTCAGGGCTGGTAAGATAGCTTAGCAGGTAAAGACATTTGCTACCAAACCTGACCACATGACTTCAATCCCCAGGACCCTCCTGGTGGAAGAAAATAACCAACCCAGACAAGTTGTCCTCTGACCTCCACACTCATGCCATAGAGAGCACCTGCCCCCACCACACATATGCTAATTAATTAAGTGTAATAAAAGCCAGAGCTGGGCGTGGTGGCACACATCTTTAATCCCAGCACTCGGGAGGCAGAGGCAAGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGTTATACAGAGAAACCCTGTCTCAAAAAACCAAAAAATAAAAAATAATAATAATAATAAATAAAATAAAATAAATAAATAAAAAACAGTAGCCTCTCCCTACTTTGTCACTGGTGGTGCCCACATGAAGCAGTTTCCTGACTGGGGCCTCCATTTTGATGCAGTTTAATGTCACCTGAGAAGCTCCCAAGATAGATCCTGCCTGGGTCCCACAGCAAGCTGCTCTGAGGCTGTTGGTCTGGAGAGGAACTCCACCACTGGCGTCTTTTCAAAAGACGTTTGAAAAGAAAAATTAACTACTCAGTGGCTATAAAATGTAGCCACAGTTAAAAACTGCTGCTCTAACCAGATTTCACATCAATTCTCACTGTGCTTCCCCCGCTGGCCTCAAACTCATGGCAATCGTCCTGGCCTCAGCCTCTTGAGTATTGAAATCACAGGTGTGAACCACCACACCCAACAAATATGTATAATGATTGATAATATATTCAGAGATATAATAACATATACCTAAAAAGTTCATAGGCAGTTATTAACTATCTCAGCTAGCAACTAGATGAATTGAAAAAGCCACATATTGAAGATACATTTAAGATCAACTTTTAAAATAGAGGACTCTTGAATCGCATAAGTAGCAACACCCTACTTTTAAAGATAAGGATCATTCTTTTCAAATGCAAACTGAGATTGACAAATACACTTTTATAATCCTCTCTCTCTTCTTTGTGAAACACCCAGTCAGAAGGTCAGAATCTAAGAATATTTATTAGGGTCAGAATTTTTTTCCTATGCTTGATCAATCTCCCATCCTTGTCTCTGGAAAGCTATGCCCAGGATCGTCCTACACAACTGTACAGGCTATACACTGAGTAACTTGGAGAGTGCTGTAGCTACTATAGGGGTTTGTTTGTCTGTTGAGTGATGAACCGTTTAGTTGAGCTGTCCACCCTCCATTCAACACTTCCCATGAACCATAAAAACCTCTTGTTACTTAGAGGTCATGAACTCCGAATAAGACTGACTCAAAATGGTGGCCTAACGTGTCTGGGTTAGATGCCGCTGAAGTGGTCATTGGCAAGTCTGCCTCTTTCAGGCCTTTACTAGGAGACCCAAAGTTTTGTCTCTCCTTAGTTAGAGATATAGCTTGGGGGCCTTGCTTGAGGCAAACAGAGCCACCCCCTTCAATTCTAAATTCAGTGGCTATGCATAAGTTCTTGGAGTCAAAAGCATAAACGGTAACAAGATGCTGACAGTCCAGTAGCCAGGTCTCCCTTCCACCTGGGACAGACACTCGACTTCCTGTTTCATTTCCTGCCTCTCCTCCATCTCTTCCACTCTATCTCCCAAACTTGCCAGTGTGGGCAAGCCCCTTGTTTCCCTGCCTGCCAGTGGCATACTAGTGTCCATATCACTACACTGTGAGAATTGTAACTGGAAAAGGGGTCCACAGCATCCAATCTCAAATATCTGTCCCCTCATTCCCTCTCTTATTCCATAGAGGCTGCATTACCCAGAGCCATCCCTCCCCACACGTGCTACCACCTTGTTCAGAGCCCCCTAGAACAGTGGTTCTCAACTTTCCTAATGCTGAGACCCCTTAATACAGTTCCTCATTTTGTAGTGACCGCAACCATAAAATTCTTTTCATTACTACATCATGGCTTTAATGTTGCTACTGTTATGAACTGTAATGCAAATCTCTGGTGTGCAGGATATCTGATTTGTTACCCCCGTGAAAGGATCATTCAACTCCCCAATAAGGCTTTTGATCCACAGCTTGAGAAACACTGCCCTAGAAGGTCCTAGTCACCTCTTAGTCCAATAACCAATAGATGTCCCAAATGCCTGGTAAAGAGAGAGCTATGCAATCAGGTCCAGAATGGCTCTTGCAAGAAGAGGCAGAGGAAATAAGGTGCTCAAGTGCTTCTGAGCAAACCTTGTATGGGACGCTACACTCTCCCATTGCTGTTCCTCTCCAGTGTAAAGCTCACTTGGCATAGCTAAAGTACCTGGTACTATCAGTTCTCAGGACTGTGACTCTGCCTCATCTTGGTATCCAGGCCTGAAACAATTCTCAGTCGTCATACCCTGGCCAAACACAAAAGGAAAATAACACAACTTCTCATATCCCTGGCCAGACTAGAGCCCTCTCTAAGCTTCTGAGACAACTAGAAGCCACCTGGTCTGGCCTCCACCAGACCTCTTCCTTTCCTGCCCTTTGTGCCAAGGTTGGGCCAAGGACCCCAGAGTTGATATCTGGCTTTTTTTTTTCCTCTGAGGCCACCCCATCCCTGCTCTATACAACTGCTTTAGCGCCTCCATTTGCTTAACCCCTTGCCCTAGTGCTTCAGGTCTCCCATAATGAAGCTAATGGACAAAAGAGAACACAATTAGCTTTCCTGAAGCTGGAGAGCTGCCCCCAGCTTCCACCCCGCCGACTGACCTGACCTATTGCTGCTACTGCTGCTGCTGGGAATCCTGGTGCATGCTGGGAAACCAAGTGCATGCCGGGATTTCAGTCAGTTCCACCATGCATTTTAAGGTTGCTTGGAACTGTGAGTTTCTAATCCATGGCGTGTGCTTCTTGAAATGAAGCTAAGAACTTCACAAGAAGAGAAGAGATGCCAGCGGTATGGAGAAGAGGAACAGCACGGGTTGAACAAGGTACCTAAAAATCGGGGATGCTCAGGACACAAATTGCATGGACTTGGCCAAGAAGACCCAGAGGAAAGTGCATTGCTATCTAGCACAGAAATGATGTAAAAGTCTCGATTGCTGTTATGGTCAGCAAGAGCTAAGACCTAGGATGAGTTAAAGTCCTATTCTGAAGCCAAGGCTCTCGCTGATCCTAAGGAGGCTACCCATCAGCATACTATTGGATCCTGGATCTCAAGTAAACATAATTACGTGTACCAAGAATTAGCCTCCTCCTGGTTAGAGATGCAACTCAGTTGACAGAGTGCTTGCCTAGAATATGCAAAGGCCTGGGTTGGATTTTCAGCACCACATAAACCAGGCGTGATGCTACATACCTGTAATTTCAGAACTCAGGAAGTAGAGGCAGGAGAATCAGAAGTTCAAGATTGGCTATGCAGCAAGTTCAAGGGCAGCTCTGGCATTATAAACATGAAGACAGCAGAAGCTCTATCTCCTATCCCAGGCCTCCTGGCCTCCCAGAAAGGTATAGAAAGACAAGTCTGAGAGATTCAGTTCTCACTGTGGCTAACTGTTAATAAATTAAGGCAAACGCTAATGACTTAATAATTTGAGTCTTGCAAAGAAGTTCATCCAGAAAGAATGCCTTGGAAGCAGAAGAGCAGAAAAGAGGAAGACCCCACCTCAGACAAAGAGGTCTGGGCACCCAGCTGAATCCCAGAGTCTGCATTCACTAACTGAGGATCTAGCTAGTTTTGGCCAGCACTTAGCCAGCTTCCCGTGTTTGGCCAGATGCCCATCTAGAAAGTAGAACTCATTGAAGATGTCCACCTGAAGCTTTAAGCTGGAAGGAGATTACAAGGGAAAACGTTGGGCAAGGTTTTGTTCTCTATCCCCCACCACCCCCCACCCCACCCCACCCCCCAAAAAACAACTCAGGCTCGATTTTCACAAATACCCTCAAGTCTTATTTACTGAAAATAAAGACACTACCTACAACCTGGGAACTCTAATGAGTTTCATGCAAACTCATGGCCATTTTCATATGGTTCTATATGCCCTCAGACCACTTCTAGATGGCTCATTCTGGAACATGGTTTTGCCTGTTTTTCCTTGTCTCACAACTATAGAGGAAACCAGGAGAAGCAACACTTCTAACCAAGCTTTCAGGATTTCACTTCCAATTTCTTTGCCTACTACGGTGGCCATGGCCAATTCAGACGTCCGGCTTCTTGAAAAAATATTCACAAGAGGAGGTATCTTGAGGGACCTCCATTCTCAGGCTCTCCAAAGGCATTTGGCTTCAGAAGCACCAGATCTCTTCAACACAGAAAAATGGCTTTAAGGCTCCAAGATTGCCCATCAAGAATCACACACATCCAAGGAAAACTGTCTGGCTCTTTGGTTCAACAGCCCAAGATGGTGGCACCAGTGGCAGCGGCAGCAGCAGCAGCAGCAACAGTTCTCAGGAGATCCAGCCAGGCCCCTTCCAGCCTCTGGAGAGCAGCAGGGCTGGCCACCCATAATGAAGCCGTGATGCTCGTGAATTGCCAGCAGCGGTCCTAATGGTGGCCCTTGGTTTCTTGCAGACATTGACGAGTGCCTCTCAAGCCCTTGTCTGAATGGAGCCACCTGCGTGGATGCCTTGGACACTTTCACATGCTTATGCCTTCCGAGCTACAGAGGGAACCTGTGTGAGATCGGTACGGCCGTCTCGGCTTCAGCTAACGTTACTAACTGCTGACCTCCTATTCCCTCACCCTTTCCTTCTAACCACAGGTTCCAAGTCTGGGCTGGGGCCCACAAGTCTACCTGGAGAGCCATTCTTGGGACACAACTGAGAAGCCGGCCCCCCCAACTCCTGATTTTAACTCTTGTTCTTGCTCTTTCCCCTTGGAAACCTTGAAATGTTGGCTGATCTGACAGCAGGACACATGTATATGCTCAGGGAGAGTGGCAAACACTAACCTTTTCCAGGCCTTGCAGACTTGCGGCTGGGACCACAGAGCTCAGTGCATGCCTCCTGCTAGAATGACACGGCATCAGTCCTGAAGGAAAATATGGGTAGGCTCAATTGGTTCTCACTCTACCAATGGCCGCAGATCTTCTCAGCATGATCACGGGCACTGTCTTGCTGTGTTCTCTGTGGGAGTTTCATGTCCTTTCCATGACCCTAGGGAGCCACGATACCATGCTAACCAAACTGTCCTCCTCTTCTCCTGGCATGAGGGCTGTGGTTGGTTACTGGAGAGGACTTTCGTCACCAGAATGCTCCAATCACGCATGAACAGGAACTGTGCATGTCATCCTCTCTCCATCACACCATGGCGGCTGCCTTCCCAATGCTACACTGGTGCCGTTCTTTCTTTCTTGATCCCTCGTGCAAAGCAAAAAGCTAGCCTGGCAGAGCAGTCATGTTGCAAGGTGCAAGAGCTGAGTTTCCTCTGATGGGCCTTGTCAACACCTCTGCTTCTGCCATCTGTGGGCCAGGAGCCCTAGACAGGACCAGGCTGACACCCGGCACTCCACTTGTGGTGCTTTCTAAACTCCTGCCAGCCTCTCTGGCCTTGGGCATTCCCAATGCAGAAAAGGAGGCCCAAGGCATTAGGGTGCTGGTAGCAATGGCTCATAGAAAGTTGGAAGTGTGCATGGGCTCAAAACCCTTTTCAACAAACGCTTGTTAGGGAAACTTCCAGAAAGCAGCTGAAACTCCTGGTAAATTTCCCTTTGAGCCTGAACGGTGTGAGAAGGTAATAAGAATTCCACGTTCCTTGGAGGCATTGCCAAGGGTACAGCTGACAGATGTGCATAGGGCTTCTGTAGTAAGGTTGGGACACTCATCTTTCCTGCAGCCTCCTGCCTTCTACGTATACCCCAAGAAGTCAGGTGCATGGGGGTCTCAGCCGGGCAGGAATAGAGTACAAGGATTTTCCCTCCAAAATGCCACATGGGAGAAAGGGCTGGAAAATCCACACAGACAACAGCTCTGGAACTTACCTTGGAAAGAGAGCCTGTGCTCCAAAAGGGACTGGGTGCAACAGGGGCCAGGCTGTGCCTTATAGACCAGGAAAGTGGTTCCAGAGCCACCCACCTGAGCCCTAGGCCTAAGTGCCCAGCAGGACAAGGCTCTGTCACAACCTGGTTGCAATGCCTCATGGGATCTTGTGTCTTGCTTGTCTCAGGTATCATTGCCTTTTCTAGCCATTTTGGAAGTCTGTCTATGTTCACTACCTCTACTGGCATGGTCCTCCCAACATGCCCAGCTCCTTCCCTCCCTGACCCTCCCTGCCCAGCTCAGCCCTCAGGTTCTGAGGCGTCACAAGCCCTGGCCAACAGGCCTGGGATGGCATCTCTGTCTCAGTGCTGAGCATCCTCTAAGGCCTCCTTGGCCTCTTTCCAGATTTTTATCCTGGCCCTTGAGGAAGGCACTGGTATGAGGGGGACCCTCTTCCTCCTGGCCTCTACTCTGCCTCTTTCTTCTCCAACAGCCAACCTTCTGCTCCCCCTCTTTCCCTTTCTAGCCTTTCCAAGCACCCACCCCATAGCCCAAAGAAGATCCCTTCCCCTCGGAAACTCCCTATCCTTCCTGGGACAGCCAGATTAGTGAAACCACCTAGTTTGGAAGCTGCCACTCATCCTGAGATATCTGTGGCCACTCCCTGAGCCCCAGGGTCCTCCCCCTCCATATGGAGGCCGCAGGCAAAGAAGGAAAAAAGATGGATTTAGAGTTCCCTCTGTCCAGTGCTCTCTCTACTGACAGATGTTTAACTACTGGAGCTCACAGAGGAGAGGGAGTCCTGACAGGAGGCTTCTTTCCAGTCCTGAGATGGCAACCCTTCCACCAGGGCTACCCAACAGTCAACCACACGCTACCACTGGAGGCGGTTAGCTTACCATCTACTCCTCTGATCCTGATGCACTCACACCAAGATGTCCCCTCCTCTGTCCCTAAAGACCACTCCAAGACTTCGAACCAGGCCCTCCTCCAGCACACAGCATCTGTTTCAGATGAGGCCATGGTGGGGCTCTTCTAGAGCCAACTTGGGACCCTGGGGCAGAAACACTTGCCCAGCATGCCTGAGGTCCCAGATTTCATCCCAGTGCTGCACAAAGCAATTAGAATCAAGCTACTAACAACGGCAACCAGCTCAGGTCCACGGCCTAAAGCTTAGACTCCCAAAAGAGTTATTCTTGAGGGTCTCTGGCCTCACACAAGATTCTGTGGGGAAGAGGGTACCAGCCCCACCATGCCCATCCTCTTCTCCGACCTCCACCTAATGCCCACAGCTATTTTTCCCAGAATCCCTAAGAGACTGAACTATGTTTTGCCCTAAATTTCAAAGACTGTCCCTTTGTCCCCCAAGCCTGCTTGACCCTGCCAGGCCTCCACTAACCCACACAGGGCATGAATCCACCCAGAGGAGGAAATCTTGGGAGCCAAGGTGTTATCTCAGAGAAAGTGAAGCTCCTTTCCCGGGTGGCATGCACATGGAGGCTTCCAAAAGTCAGATGTCCCTGTCTTCCACTTGAGCCTCTCTCTAGCTGAACCTGTTGCCTCCCTCCAGGGCATATCATTTAAGGTGGATTAAAAAGAGAACTCCACACCATAAGACCAGGACACAGCATTTAAGGTGGATTAAACAGAAGAAGTCCATGCCACAAGACCCAGGGCACAGTATACTAAGCATAGAAGTCCATGCTACAAGACTAAGTGACCACACTCCCAACCGGCTTTGCCCCCTGTTCAACTTCCTGACCTGTGTTACAG
Seq C2 exon
ACCAGGAGCAATGTGAGGAGGGGTGGACTAAGTTCCAGGGTCACTGTTACCGCCACTTTCATGACCGAGAGACCTGGGTGGATGCGGAGAGACGGTGTCGGGAGCAGCAGTCACATCTGAGCAGCATTGTCACTCCTGAGGAACAGGAGTTCGTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030607-Acan:NM_007424:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(30.2=59.3)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: