BtaINT0012509 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016158 | ACAN
Description
aggrecan [Source:HGNC Symbol;Acc:HGNC:319]
Coordinates
chr21:20862024-20865449:+
Coord C1 exon
chr21:20862024-20862137
Coord A exon
chr21:20862138-20865290
Coord C2 exon
chr21:20865291-20865449
Length
3153 bp
Sequences
Splice sites
5' ss Seq
TTGGTACGG
5' ss Score
6.56
3' ss Seq
GCCCCTGCCCTGTATTGCAGACC
3' ss Score
10.25
Exon sequences
Seq C1 exon
ACATTGACGAGTGCCTCTCAAGCCCTTGTCTGAATGGAGCCACCTGCGTGGATGCCATCGACTCTTTCACATGCTTATGCCTTCCCAGCTACCAAGGGGACGTGTGTGAGATTG
Seq A exon
GTACGGCTGTCTCGGCTTCAGCTAATGTTGCTAACTGCTGCACCCAGTCTTCCTCCCTCACCCTTCCCTGCTAACCACAGGTTCTAGGCCCTGGCTGGACCCCCCACCCAAGATCCATCCAGGCAGCCACTTCCAGGGCCACAACTGAGAAGTCAGCTTCCCTCACTTTCACTCCTTCTCTTGCTGTTCCCCATGGAAACCCTCCTCTGGTGCACTGGCTGACCTGACCACAGAAGAGCCAGGCAGGCCAGGCCAGTTTGTGTTTTGGAAGGTGGAGCTATAGAGGAAACTTTCAAATACTAACCTTCTCCAGGGCTGCCAGATGCCACCAGCAAAGTTGGTGCCTGCATCAGACTAAGAAGACAGAGCCGATTCCATGCATTTGTCTTGAAGGAAGCTATGGGTGGGAGTCATTGGTCCTTGCTCTGGATGATGGCCATGGATCCTCCCAGCATGCCCATGGGCTTGTGTCTGCCTGCCGTCTTGCCCATGGGACTTTAGTGGCCCCTCCATGGCCAGGGGAGCCACTGCACCACACTGGCCAAGCTGACTTCTTCTTCTCTGGCAAGAGCTATGGTTGATCTGTCTGAGAGCTCCCATGTCACCAGCATGCTCAGGTCACACATGCACAGGGACTGTTTCGTGTCACCTTGTCATCATTGCCACCATGACAGCTGCCATGTCAACACCACTCCGGTCTGTGCTTCCTTTCTCGCTTCCTTGTGCAAGGCAAAAGGCTGGCCAGAGAGAACAGAACCTCGTTACATGGGACAAGAGCTGAGTGTCCTGTTCCTTCTTAAACAATTTTTTTTTTTTTTTTTTTTTGCCACACCACGTGGCATGTGGAATCTTAGTTCCTGACCAGGGATCAAACCCGTGCCCCCTACACTGGATGAGCTTCCTCTTGCCAACCCCTCTGCTTCTACATCTGGGCCAGGACCTGCCAAGGGGAGCTGTGGGCCAGGAGCTTCCTGAGGCCAGACTGTGCCTGAAGCTCTCTCACCTTTGATGTTTCCTAGTCTCCCCATCCTCCTGGGTCTCAGGGCCACCCCAACTCAGAAAGGCTTGCTGTTGCTAGTAGCAACGATCCATGCAGAACTGGTAGTGTTTAGGGGCTCAAAGCTATTTACAATGAAACCTCAAGTTGGTCATCCCAGAAGCTTCCGAACAGCAGCTGAAACTCCTAATCAGCGTGGTAAGATAGTTTTGGAATGTTTCAGGCTGGTGGAGGAAATTCTGAATGAAAAGGCTTGGCCTGGACCCTCCTTCTCTGCAGCTTCCCATCCTCCACCTTCACCCCAAGGCTCCAAAAAATTGGTGCAACGGGTCTTTTCTGGGGTGTGAGTGGAGAGTTACAAGGATTTTCTCCCCGGGGTGCCAGAATATTTGCCACTGGGAGAAGAGTCTGGAATGTCCATGCAGACCACAGCTCTTGGGTGCCAGGCTGGGTGAGGAGGTGCCTGCACAGGGCTCTGCCTTCTGATGCAGCAAAGAGAGGGTGCTGCCGGAGCCCCAGAACTGGGCCCTGGGCCTGGACACCCAGCTGAGCAGGGCTGCCTCTCTTCTCCCATCCAATCCTGAGCACTCACCACCCCCAGCGGGTGCTTCCAACCTTGGCTGTAACCCTGAGCCTTCTTGTAACCTTCCTGGAGGTCTGTTGCTTATTTCCTGAGAGCCTCCATTTTGCAGGACCCTGGCTCCTCTTGGCTCAGCTATTCCCTCCAGCTTTGCCAGCCCAGCTCAGCCCTCAGGCCCCGAGGGGGTCCAAGAATTGACCCCCCAAGTCAGCCCTGGGATGATGTCTGTGGCTTCCTCAGGTGCTCAGTTATCTCTGAAGCCTCTCCACCTTTCTTTCCAAACCCTTTGGAGAAGGTGTTGGCGGCAGGGGGACCAGCAACTTCCTCCTAAGCACTTCCTGCTGCTCTGCCTCCTTCTTCAAAGACTGCCGGCCACAAACTCTTCTCTCTGTGTCTGTCTTCCAACCCTGCCAAGCAGTAGTGATCTTTTCTTCCTAGAACTGCCCGACCAGAAGGCTGCCACACAGCCTGAGGGGTTCATGGCCCCACACTCAGCTTCAGGGCCCTAGGGACAGTCCTTCACCTGTGAGACACCAGGGGAAGAAAGAAGAGAGGATCTTGGAATTCCCTCTGTCCAGTGCTGTGCTGGTAGATGTTTAACAACTGGCTCTCAAAGAGGATGTGTAGCACCTGCCAGTTTCTAAGATTCAACACTCCCACAAGGGCCAGGGAAGCTACCAATGTCATACCACTAAAGGCCGAGTTGGGGGGGGGGTGCTTCCATAATGGTCCAGTGGTTAAGAGTCCCTGCTTCTACTGCAGGGGGCATGGGTTCTATCCCTGGTCAGGGAACTAAGATCCCGCATGCCTCATGGAGCGGCAATAAATAAATAAAAATAAAGGCCAAGTTGGGAAGACACACACCAGCTCTAGCACATCCCTGCCTCTGTCCCTCTAGACTGTTCCAAGAACTCCACCTCAGTGCTTTCTCCTGAACTCAGAACCCCTTATCAATATAGATTTAGGGGGAGAGAAGTCCCTCTTCTCATCCGCCACCAAGAAATAACATGGAAAACCAGGGTCCCTGGGTCATGGACTCCAAGCCAGTATTGCGTGCTCTCCTAGAGCCAACTCTGATCAAAAGGCTTAGAGGTCTGTGTCTTCTTTGGACCAAAGCGGACTTGGTTCTCCTCCTCTGTCCCCACCCAAGCTTCCATTCCATGCCCCCAGCACTGCCTGCTCCTGCCACCTGCACACACTCCCCTGCAGCCCCCTCTCTCCCTGAAGCCCCTCAGAGTCTCCTTAAGTTGTCCTTAAGCCTCAACACCTCCTACCTTCCCAACTCTTTTTACCTGGCCTACTGAGCTCTGCCAGTCCTGGTGAGCAGGCATCAACAGGAGAAAAACTTCGGGGGTGGGAGGCGATAAGGGAAAAAGAGAGGGTCCCTGGCATTTCCCAGAGGCCTCTGGGGGATGAGGGGCAGGACCAGGCCTCCCGGCTTCCCACTTGAGGCTCAATCCAGTGGGGCCTCTCCCTGCCTTTCAGGGTGTGACGCAGAAGGCAGGATGAACACAGGAATCCACCACCCTTAGTCGGCCCCCTGGCTCTCTCCTCAAGCCCCTGCCCTGTATTGCAG
Seq C2 exon
ACCAGAAGCTGTGCGAGGAGGGCTGGACCAAGTTCCAGGGCCACTGTTACCGCCACTTCCCCGACCGGGCAACCTGGGTGGACGCTGAGAGCCAGTGCCGGAAGCAGCAGTCACACCTGAGCAGCATCGTCACCCCCGAGGAGCAGGAGTTTGTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016158:ENSBTAT00000021512:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
NA
C2:
PF0005916=Lectin_C=PU(30.2=59.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]