BtaINT0013151 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001417 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr25:18401591-18403994:+
Coord C1 exon
chr25:18401591-18401670
Coord A exon
chr25:18401671-18403870
Coord C2 exon
chr25:18403871-18403994
Length
2200 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ACACTTTGCCTTCTGCTCAGTCT
3' ss Score
5.32
Exon sequences
Seq C1 exon
ACATTTTTCAAATATCCAATTACCCAATGCCTTGCTGCACCTTCTGTATATCGAATGATTTTGCAGCAGAATTACACCAG
Seq A exon
GTAAGGTAGAAGTGGCTGTGGCTGGTAACAAGAATATCTGGGTACCATTTTAAGTAATCTGATACACTGAAGTCTGTTTTCAACTATGGTTCTTTGCGGATACTCTGTGTGTGTGTGTGTGTGTATGGTAAGTGTTGGTGGTGATAATTAGCAGCCAGTCTACCCAAATGAAACATTCAGTGAACCTTCATCGTTTTGTTTCTTTTTCTTTTTTAAGCACTTTTGTTGTGAAATAAACATACAGAAAAATACATAAGATACACATTTACAGAGTAATGAGTTGTTGGAAACAAAACATCTATGTAACTACTCACTTAAGTCACAAAAAGAGAACATTGCCAGCACCCCAAAGCCCTTCTCATGCCTCCCCATCTCCCCAAAAGGAATCTACTATCTTGGCTTTCATGGTGTTCATTTCCTTATTTTTCCCTTAGTTTACCTCCTAAGGAAATATCCCCGAAAAATTGTTCTATTCTACCCGCTTTTGAACTTCATGTAATTATACATTATTCTGTAGTATCTGGCCTAGTTTTTCACTGTTATGTTTCTAAGATGTGTCTGCATTGTTACCTGATAGTGGAGTCAATTTTCATTACTATAAAATATCATATTTTATAAAAGTACCACATTTTTAATGAATTCTATTAATGGACATTTGGATATGTTTCATTTGGGACTATTGATTAATGCTACATCGAATTCTTGCACATGTATAGTGATGCATAAACACACATTTCTGTAGAACTTCTCTGGGAAAGGAATTGTTAGGTCACACTGACATCGCACGCTACTTCTTTGTTTTCCAAAGTATTGAACCAATGTATGCTCCCACTGGGAGGGTAGGAGAAGTCCTATTGTTCCATATCTTCGGTAGTATTAGTTATTGTCAAAGTTTTAAATTTTGCCAACTTAATGTGTTTGTATTCTCTGGTTTTGTTTTTGCATTTCCACATGTTTGTGGATTATTTTTTAACTAACTTGAAATCTGTTCTTTGAACCTTATGGTCACTTATATAACTCTTATATAACTTACATAACTCTGAAAGTGAAATGGCTACTTCAAAATCAGAGCTAATGTTTTAGACTTAAGAGTTAAAATATTAAGGAGTTCAGTTTATTAAGACAACTGAAATACAGCTTGATTTTACTCATGAACCCTCAATCTAGTTGAAATATGTTTCCAACTTTACTTCAAATCTTATATTTCAGTCTCTTCTTGCGACAACCCCGAGATGGTGACCAAACCTAGTTAAAGTTCAACCAGGGCTTAACTATTGACTCCACTGGACACTCTGCCCATTTTATGTATTTCAGATAAAGCTCAATAAGAATGAGAAACATGCGCTCAATGAAACCAGTCATCCTGTCCTTTACTACTGGCTCTGTTTGTACCAAGAGAGAGTGATAAGGGAGTCTGCCACCTCCCTCATTCCTAGAAGTTGTCCCAGCTCAGCACTATGCCAACTGGTACTAAGACCTCAATCCCATTTACCCACTTCCTTCAGGGAATCCATCGTTTTGTGATAGTTTCTGTGTCATTTATGGACATTTTCATGGAGAAATCGAGGAGAGGAGTTACACACACAACGTACCTGGAAAACTACTGCGAACGTTCACAGCAGACATTTCTGTTCAGTCCAGAATCCTTCAGGGCTGCTGCCTGTGATCCTTTTCTTTTCTTACAGAAAGCTCACTCTTCCTGATGTCCTGAGCAATTCATTTCCAACCCCTAATTTGTGTTCTCCAGCCAGAGAATAAACAAAAGCTCTTCAATTCATATAAGTCCACTGAAGGCAGTATAGTTTTATTATCATCCTAGCATACCCTTGGGGTCTTATCCCTCAGTCCTTATGGTTTATAAAATATCCCTTTAGCTACACATAATGTTTAGAATGAGTTCTAAGCACACTCCCCACCCCCATTAGATCAACATCCAAATTCAATCCTGATCTCTGTGATTTAACCCATTAGACTCACCACAACCACCACTTACCTTCTTCTAGAGGAGTTAACAGGGACCAAATGGAAATGAGTACCTTCCACTTGGATCTGACCATTAGTAAATGCCCAGAAGGCAAGTAAGAAAGTGAAGAAGTAGAAGGATGAATGATCCAGATGACAGTGCTCTTAACATCCCGGGCCTAAAGTAGAGCACCCAAGCCTAATCTGAGCCTCTGTTGACACTTTGCCTTCTGCTCAG
Seq C2 exon
TCTTAGGTTCCCCACTCTGGAACACTGCTGTACTGGTGGGGAAGCCCTGCTGCCCGAGGAGCAAGAACAGTGGAAAAGACAGACAGGTGTTCTGCTCTACCAGGCCTATGGACAGTCAGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001417:ENSBTAT00000001859:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]