BtaINT0013171 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006447 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr25:18627940-18635317:+
Coord C1 exon
chr25:18627940-18628147
Coord A exon
chr25:18628148-18635173
Coord C2 exon
chr25:18635174-18635317
Length
7026 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTGTAATTCTTCCTTCATAGACA
3' ss Score
8.04
Exon sequences
Seq C1 exon
GGACAGTTCTAATTCCAGGAACCACTCAGATGACCCAAAAAGACATCCTCTACCGACTACAATCTTCAAAAGCAAAGTGCATTATTACCAATGAAGTTTTAGCTCCAGCAGTTGATGCTGTTGCATCTAAATGTGAAAATCTGCACTCCAAACTAATTGTGTCTCAGAGCCCCAGAGAGGGTTGGGAGAACCTAAAGGAGATGATGAA
Seq A exon
GTGAGTAACCATAATTGTTGTAGAACAGTTTTCCAAAAAGAAACACAATATTGATAAGATAGTCAACCCTGGATTAACCAGAAAAATGAAAATTAAAATAATAGACAAAGGGAACAACTGGTGATTATAGTGCAAAGCTCTGAGGCAAGGAACTGGTGGTGTTTTTCACAGGTTGGGATCTCAAGGAAGCACACCATAAGACAGACATTAGTTGTGTAAGTGAATTAAGAAGTTATCTTAGAAACAATACCTGTGAAGAAAAGGGAACAATGTGGGATTGGGCAGCTGTTGAAATTTATCATCCACATACTTCAAAAAAGCCATCAGTCAACCTATGGGGATCACTGGAGTTTAGATAGCCCTTCAAAGCTATGTCCAGCTAAAGCAAGAGGTCCAATCAGATCAGATCAGATCAGATCAGTCGCTCAGTCATGTCTGACTCTTTGCAACCCCATGCATTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAGACTCACATCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTTGTCCCCTTCTCCTCTTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAATTTCAGCTTGAACATCATTCCTTCCAAAGAGATCCCAGGGCTGATTTCCTTCAGAGTGGATTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACACTTCAAAAGCATCAATTCTTCAGTGCTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCGTAACTTTCTTTCCAAGGAGTAAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAGAAAAATAAAGTCTGACACTCTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTTGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTCCACTCTCCACTTCCACTTTCATCAAAAGGCTTTTATGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGTTTCTTCCAGTCCAGCCTTTCTCATCATGTACTCTGCATATAAGTTAAATAAACAGGGTGACAATATAGAGCCTTGATGAACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAAATTTCTCAAGAGGCAGATCAGGTGGTCTGGTATTCCCATCTCTTGAAGAATTTTCCAAGGTTTATTGTGATCCACAAAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAAGAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGTGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCAGGAAGTTCACGGTTCACATATTGCTGAAGCCTGGCTTCAAGAATTTTGAGCATTACTTTACTAGCATGTGAGATGAGTGTAATTGTGTGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGAGATTGGAATGAAAACTCACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATGTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGGAATGGCTCAACTGGAATTCTATCACCTCCACTAGCTTTGTTTGTAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCCAGCTCTAGGTCAGTGATCAGTGAAGGGAAGGGTTTAGGGGCCAGAATGAGGGTCTTTGTCTGAACAAAGAATAGATTTTTCTGGCCAATGTGGGAAGTTTATTACAATCGAACTAAAGATGAGTGACATAATTATCAGATGGTGACCAGGGCCATGCTAAGGTTGGATATCAAATGTATATGGAGAGTGAGGTCCTCGAATTCTGTCCTCCCCAGCAGTGCTTTGTGACTGGCCAGACAAGATGAAGACTAAGTTCATCACCTCCATCAAAAAAGAATAGAAATGTACGCTGTAGGATTTTAGGAGTAGGAGGGAAAGTGCCTAGTGGGTCATTACAGTGGATGATGAAAATGAGAAGTGAGAACTGGAGCAAGCTAAGAAAGTGAGCAGAGATCTGGTTGGGGAAGTTGTAGGCACTGATGGTTTCAAAGAATGATTAATAAATGAATGAATAGGTGTGTCAGGAAGAGAAATGCTGGCCCTGTGAGCTAAAAAAAAAAAAAAAAAAAAGCCTTGGGGAGTGTGGTAAAGGGCAGCACCTCCATTAACCTGAGAGAAATAGGAGAGAAAAGATCATCAGAGAGGACAGGAAGAGATCCAAGTGTTCATTTAACAAATATTTACTGAGTTCCTGCACTGTGTAAGGCAATCTCCCAGGAATGCTGTGGGTATCTTGGTGAGCCTACGAGCTGTCAGAGGCTTGCAGTCTATAGGGTTTTGGGATCCAGATCAAAGTGGTCCTCCAGTTTGTCTTGAGTAGCTCACCAAGGGGCCACATTGAGGACTGCGTAGAACCCACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGCCCAGCAGCGGGATTGGCTAGGCCATATGGCAGTCCTATTTCTAGTTTTTTTTTTTTTTTTTAAGGAATCTCCACCAGTGTTTTCCATAGTGGCCGTACTAGTTTACATTCCCACCAACAGTGTAAAAGGGTTCCCTTTTCTCCACATCCTCTCAAGCATTTACTACTTGTAGACGTTTGGATCGCAGCCATTCTGACTGGTGTGAAGTGGTACCTCATTGTGGTTTTGATTTGCATTTATCCGATAATGAGTGATGCTGAGCATCTTTTCATGTGTTTCATAGCCATCTGTATGTCTTTGGAGATATGTCTATTTAGTTCTTTGGCCCATTTTTTTATTGGGTCATTTATTTTTTGGAATTGAGCTGTAGGAGTTGCTTGTATATTTTTGAGTTTAGTTTGTCAGTTGCTTCATTTGCTATTATTTTTTTTCCCATTTTGAAGGCTGCGTTTTCACCTGGCTTATAGTTCTTTTGTTGTACAGAAGCTTTTAAGTTTAATTAGGTCCCATTTGTTTATTTTTGCTTTTATTTCCAATATTTTGGAAGGTGGGTCATGGAGGATCCTGCTTTGATGTATGTCAGAGAGAATTTTGTTTACGTTTTCCTCTAAAGACATATATTTAAAGCTCAGAAGCCTTTGGAATATGAAGTGTCTGTTTTTTTTTTTTTTTTCCAAGCAGTTTGAGCTGTATTTAAATGTTGATATTTTCTTCTTAGGAGTGTCCTGTATTTCTGTTTCACTTTTTTTTTTTTTTTTTTTTTTTTGATGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCATCTATTCCCATGAAGTGATGGACAGATGCATCATCTTTGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTCCACTCTCCACTTCCACTTTCATCAAGAGGCTTTTATGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGTTTCTTCCAGTCCAGCCTTTCTCATCATGTACTCTGCATATAAGTTAAATAAACAGGGTGACAATATAGAGCCTTGATGAACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAAATTTCTCAAGAGGCAGATCAGGTGGTCTGGTATTCCCATCTCTTGAAGAATTTTCCAAGGTTTATTGTGATCCACAAAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAAGAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGTGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCAGGAAGTTCACGGTTCACATATTGCTGAAGCCTGGCTTCAAGAATTTTGAGCATTACTTTACTAGCATGTGAGATGAGTGTAATTGTGTGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGAGATTGGAATGAAAACTCACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATGTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGGAATGGCTCAACTGGAATTCTATCACCTCCACTAGCTTTGTTTGTAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCCAGCTCTAGGTCAGTGATCACACCATCGTGATTATCTGGGTCGTGAAGATCTTTTTTGTACAGTTCTTCTGTTAATCAGTAACTGGGTACAAATTGTCTTTAGAAGGAGGCATGACCTTGAGCAAGGCAGCTATCTTCAGCCAAGGCAATATCTGAAGAGGGATCTCAGCACCTGAAGGGAAGCATGTCCTAAAACTCTGCAGCAGGATCTAGGAGGTGCATCACAGCATCAATCACAGAGCTATTATCATTTCCCATAGGAACTAATCAGAATCAATCCTTCTGTGGATGTTGTATTATTCCCTTGCTGACAGTGACATTTCTATCAGGTTATAGTAAGAAGAATACTTAATAGATGCAATTAATAAAACTATTACACAGATATTCAAGCCCTGATATGGGGTGCTTCTAAGGGTCACTTGGAACTTTTTGTCAAGTATTGGTTATCTTAGCTTTAGGGTGGCAGCAAACTCCCTCTCTAGAATGAGCTTCCTACCTTTACTCAACGATTTTGGAGCAAGTTTGCAACTATGGACTTGTTCTTTGTCATTGTTTAGTTGCTAAGTTGTGTCCGACTCTTTGTGACATCATGGACTGTAGCGCACCGGGACTTGTTATGACTCTTCTAAAATAGCTAACATTTGTTGTGTGCATACATGCTCAGTTGTTCAGTTGTGTCCCACTCTTTGAGACCCCATGGACTGTAGCCCACCATGCTCCTCTGTTCATGGCATTTTCCAAGGAGGAATACTGAAATTGCCATTTCCTATTCCAGGGGATCTTCCCAACGCAGGGATTGAACCCATGTCTCCTGTGTCTCCTGCACTGGCAGGTGGATTCTCTATTGAGTTCTTACCAAAAGCCAAATTCTGTTCTAATAAAAATAGTGTTATAATTGTATAATATCTAACACTTATATGGCATTGGTTATGTGCCAAAAACTGCACTTCAGATATATTGGGTTGGCCAAAAAGTTCATTAGAGTTTTTCAATAATATATTATGGAAAACCTCAAACAAACTTTTTGGCCAACTCAATATTAACTCATTTAAATATCACAACAAACTATGGGGTAGGAATTGTTAAATATACAGATACTCATGCTCAGTCACTTCAGTCATATCCAACTCTTTGCGACACTATGGATGGGATTTTCTGGGCAAGAATACTGGAGTGGGGTTGCCATTCCCTCCTCCAGGGGTTTTTCCTGACCCAGGGATCAAACTCACATCTTCTGCATTGCAGGTGGATTCTCTGGTTAGACAGATAAATAAGGTCAAATGTTAGGATCTGGCAGAACTGCATTTCACACTCAGGCAGTCTAGCTTCTAAGCCCACACTATTACCTGCTAGGTTTACTGCTTCTGAGAGATTGGTACAATAAACCTTCCGTAGGTTTCATGAGCAATAATATTTGTGATAGAAGTGATAGGTACACAGTTATAGGTACTAGCTTTATAATGAAAAAAATTATGGAATCATAGCCTAAACATTTGGTTTAGCTATGTTAGGATTTAAAAATAGAAATAGTTCTCATAGCTGAATATTTCTGATTCATTCATTTTCAGCTCAATATTTCCTAATAAAATTCTGTATGATTCTTAGAGCCTCAAATGTACAGAGTTTACTTCCTTTCAGCTGCCCTGATGTATGACATATATAAAAGCCCAATTATCATCTGGAACCAAAATGTTTTCTTTCTTTAACTGAAACCCTTCCTTCCCTAAGTGGATACATAGATCCTCTTCAGTCTTTTTGCTTACTATATTCAGAACTATGTAGATTCTCTTGTGCGAAACAGAAAAACCATCCTTTTTAGGGGGCAGCAAATGGTTTTTTACAAACGGGATGGATAATAAATATATAGGATTTGCAGGCCATGTAGTCTCTATCATACCTACTCACTGTCATAGTGTAGAAAGCAGTCATAGGCAATACGTAAAAGAATGGACACAGTTGTGTTGCAATAAAACTTTATCTGTGAAAACAAAAGGCAGGCCATGCTTGGCCCATAGGCCTGTAGTTTAATGACCCCTGCCTTATACCATTACACATGACTTCTATTAACATACTCATTTTTTTTAAAATCACATTTTACCTCACATATACATGATTAGAAGATCATAGAATACTCATTCTGTAGAAGGTATGATAAAATTCTTGAGTTTTTTTGTAATGCTTTCACTCTTCTTCATCACACAGTAAAAAGCTATGAAGTCAACCTGTTATAAATGGGCTATTGATGGCAAAGTTTAGCTTGTTTCCAGAAAGCACCTTAAAAGATGGAGAGAGATGGCTTTTACCTTGGAATTCAGTATAAGTCCCTGGGGCTTAATCAATGAGATGAAGAGGTCTGAGTAAATCCTTTTCTGTGGTAACAGTCTATGATACTGTGTTTAATATATACAACCATTGTAATTCTTCCTTCATAG
Seq C2 exon
ACATGCCAGTGACAACCACACCTGTGTGAAGACAAAACACAATGAGATGATGGCCATTTTCTTTACCAGTGGAACAAGTGGATATCCTAAAATGACTGGACACACCCACAGCAGTTTTGGTTTGGGATTATCTATAAATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006447:ENSBTAT00000008455:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.7=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]