HsaINT1002662 @ hg38
Intron Retention
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20777373-20780857:+
Coord C1 exon
chr16:20777373-20777580
Coord A exon
chr16:20777581-20780713
Coord C2 exon
chr16:20780714-20780857
Length
3133 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTGTAGTTTTTCCTTTGCAGACA
3' ss Score
9.45
Exon sequences
Seq C1 exon
GGACAGTTTTAATTCCAGGAACCACTCAGCTGACCCAGAAAGACATTCTCTACAGACTACAATCTTCAAAAGCAAACTGCATTATCACCAATGATGTTTTAGCCCCAGCAGTAGACGCTGTTGCATCCAAATGTGAAAATCTGCACTCCAAGCTGATTGTATCAGAGAACTCCAGAGAGGGGTGGGGGAACCTCAAGGAGTTGATGAA
Seq A exon
GTGAGTAGCCACACTTGTTGTAAAACAGCTTCCCAAAAGGAAAGGCAACAATAAAAAGATATTAAACCCAGCAGTGATTAGAAAAATGCAAATTAAAACAACAGGCAAAGGGAACAGTTGGTAGTTATTGCTGCACTAATAGTGCTAAACTCTGAAGTAGGAAGGAGCTTGGAGTGCTTTTTGTAGGTTGGGATCCCCTGAGATTGGAGATTGGTGTATAGGAAGTTTATTAAGGAGTTCTTTTGGGATTAACACCTGTGAGGAATGAGTAAGAATGTCGGACTGGGCAGAGAAAGAAATTTATTTGCGATGTATTCCCTACAAAGCTTTCAGTCAACCCACTGGGACCTCTGAAGGACCTCCTCAAAGCTGTTCCCAGCTAAAGCAAGAGGTCCTGGCCTTTATATACCCACATTGATCAGTAATTGGATGGGGTTGTCCCTAGGAGTCAAGACCTTTAACAAAGCCACTGTCTTCAGTCAAGGCAATCTCTAGAGAGTGCTCCCAGCACCTGTCACTGAAGGATCACAGTCAGTCCTTCAGTGTTGGCTATCCCATTCCCTTGCTGACAGCAACACTGGTATCAGGTTAAAAGAAAAAATGCTTAATGTTAATGGATGCAATTATAAAAGTGAATTTCACTGATGTTGAAGCCTAGCATGGGGTGTTTCCATGGGTTACTTGGAACTCTTGCCAGGTACTGGTTATGCCTTAGAATTGGGCTGGCAGCAAAGTCCTTCTCTAGAATGAGCTTCCTACCTTTACTCAAGGATTTGGGAGCATGCTTGCAACTATGGACTTTTCCTACCACATTTAAAATTCCTAATATTGAGTTCTTGCCAAAGGCCAAGTACGGTTCTAATAAAAATAATGTTATAATTGCAATCATAGCTTATATTGATACGGTTATGTGCCAGAAACTATTCTAAGGACTTCAGATATATTACCTCATTTAAACCTCACAGCAACCTAGGTACTATAATTACACAGCTGAATAAGGTCAAATGCTAGTATCTGGCAGAGCTAAGTTTCAAACCCAGGCAGTATGGGTGCTGAGCCTACACTCCTCACTTCTGTATGTACTGCCTCTAGTAAGAGATCAGTACAACAACCCTTCCTCAGGTTTTGAGGGCAACCGTATTGGTGATGGAAGTGATAGGAACACAGCTATAGATACTTTTTTTTTTTTAGACGGAGTCTCACTCTGTCACCCAGGCTGGAGTGTAGTGGCGCAATCTCGGCTCACTGCAACCTCCACCTCCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTTCCAAGTAGTTGGGATTACAGGCACATGCCACTATGCCCACCTAATCTTTTTGTATTTTTAGCAGATATGGGGTTTCGTCATGTTAGCCAGGATGGTCTCAATCTCCTGACTTCATGATCTGCCCGTCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCTATAGATAGTATTTTTAATTAATTAAGATAATTATGAAATCATAGACTGAACACTTGGTGTAGCTTTGTCAGATTTTGAAAACAGCTTTTTAGCCAGGCGCAGTGGCTGATGCCTATAAATCATCACTTTAGGAGGCTGAGGTGGGATGATGGTTTGAGTCCAGGAGTTCAAGACCAGCTTGGGAAACACAGTGAAACCTCTTCTCTATATAAATAAAAATAATTAGCCAGGCATGGTGATGCATACCTGTAGTCCCAGCCTACTCGGGAGGCTGAGGTAGGAAGATCGCTTGAACCCAGGAGGTCATGGCTGCAATGAGCCATGACTGAGCCACTGCACTCCAGCCTGGGTGAGAGAGAGAGAAACCCTGTCTCAAAAAAAAAAAAAAGAAAAGAAAAGAAAAGAAAGAAAAGAAAATAGCTTTTCTATATTTCTCATGAATGGCCTGGTTGTTTCTACTCATTCTCAACCCCACATGCCTGGATAAGTCTGTGTGCATCTTAGACACTTGATATGTATGTGTGCAGCTGCCCTAATGTGTGACTTGTATAGAAGTCTGATTATCCTTTGGAACTAAAAGGTTTTCTTTCTCTTTAACTGGAACTCTTTCTTCCCTGGATGGATGCTTAGATCCTGTTCAATCTTATTGTCTGCTATATCCAGAACTATGTAGACTCTCTTGTGGGAAACAGAAAAGCCAACCTTTCACGGTCAGCAAACTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTTCTCTGTCACCCAGGCTGGAGTACGGTGGCTCGATCTTGGCTCACTGCAACCTCCACCTCCCTGGTTCAAGCGATTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTATGTGCCACTGTGCCTGGCTAATTTTTGTATTTTCAGTAGAGACAGAGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATTCACCCGCTTCAGCTTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCTCAGCAAACATTTTCTGTAAAAGGGACAGAGAATAAATACTTAAGGCTTGCAGGCCGTATAGTCAGTCTCATCACAACTACTCAACTCTGCCACTGTAGTGTGAAAGCAACCACAGGTACTACCTCAATGAATGGGCAATAACATTTTATTTACAGAAACAAGAGGCAAGTCAGATTTTGCCAGTAGGCTGTAGTGTGTTGGCCCATCAGTACCCATGGCTTTTACTAACATGTATTGTATTAACATACTCATTTTTAAAAAATCACATTTTAAAGCATCCATAGGGGAGGGAAGGGGAAAATTCTTCCTTATCCATGATTGCAAGATCACACAGACTCCTTACTCTGCTGGAGGTATGATAAAAATCTCAAGTTTTAAAAATGCTTCAATCCTTCTTTATCATAGAATAAAAAGCTAGGAAAGCAGCTATTATAAATGGGCCTTTGATGACAAAGTTTAGTTTTGATTCTAGAAAGCACCTAAAAGGATAGAGAAAGTGATGGCTTTTACCCTGTAATTCAAGCTAAGCCACTGGCACCTGATTCATGACATGAAGAGGTTCAAGTGGAGAGCTTCTCAAAATTTTTCAGTGGTAACAGTCTGTGATGCTGTGTTTAACATGCAGTCATTGTAGTTTTTCCTTTGCAG
Seq C2 exon
ACATGCCAGTGACAGCCACACCTGTGTGAAGACAAAACACAATGAGATCATGGCCATATTCTTTACCAGTGGAACAAGTGGATATCCGAAAATGACTGCACACACCCACAGCAGTTTTGGTTTAGGATTATCTGTAAATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187:ENST00000289416:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(15.9=87.5)
A:
NA
C2:
PF0050123=AMP-binding=FE(10.4=100),PF139001=GVQW=PD(36.8=14.6)
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains