BtaINT0013323 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009696 | ACTN2
Description
Bos taurus actinin, alpha 2 (ACTN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034635]
Coordinates
chr28:9445144-9449192:+
Coord C1 exon
chr28:9445144-9445209
Coord A exon
chr28:9445210-9449033
Coord C2 exon
chr28:9449034-9449192
Length
3824 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TCCTTGCAACCTTGCCTCAGGGT
3' ss Score
6.94
Exon sequences
Seq C1 exon
AGGAAGAATGGTCTAATGGATCATGAGGATTTCAGAGCCTGCCTGATCTCCATGGGTTATGACCTG
Seq A exon
GTAAGACAGAAGTTGAAATTTTACTATGATATTCTACTGAGCTTATTTAGGTTTGTATTTTAGAAGACAACTGCCTTAAACTGTGGCAGCCCACTTGGGATTGTTTCATTTACCAAGGTTACTAGGTAACATGCCTGGTACCGTATGAAAATGACTTCCTGGAGTCAGAACATATATTTTCATTCAGTCATTGGTCAGCTGGTTTTTCCCTTGTGAAGGAAGATAACATAAAACTTTCCTGATGGTTTTTAAACAGCATTATTTGAGAGATAATTTACATACCCTACAATTTGCCCATTGAAAGTAGACACTTCAGTGGCATTTCCTCCTGATTTTCAAAGTGTTTTTTCCTCTAGTATTTTAGAAGGTAAAAAGTTTTTTTTTTTTTTTAATTTTATTTTATTTTTAAACTTTACATAATTGTATTAGTTTTGACAAATATCAAAATGAATCCACCACAGGTATACATGTGTTCCCCATCCTGAACCCTCCTCCCTCCTCCCTCCCCATACCATCCCTCTGGGTCGTCCCAGTGCATTAGCCCCAAGCATCCAGTATCGTGGATCGAACCTGGACTGGCAACTCATTTCTTACATGATATTTTACATGTTACAATGTCATTCTCCCAAATCTTCCCACCCTCTCCCTCTCCCACAGAGTCCATAAGACTGTTCTATACATCAGTGTCTCTTTTGCTGTCTCGTACACAGGGTTATTGTTACCATCTTTCTAAATTCCATATATATGCGTTAGAATACTGTATTTATGTTTTTCCTTCTGGCTTACTTCACTCTGTATAATAGGCTCCAGTTTCATCCACCTCATTAGAACTGATTCAAATGTATTCTTTTTAATGGCTGAGTAATACTCCATTGTGTATATGTACCACAGCTTTCTTATCCATTCATCTGCTGATGGACATCTAGGTTGCTTCCATGTCTTGGCTATTATAAACAGTGCTGCGATGAACATTGGGGTACACGTGTCTCTTTCCCTTCTGGTTTCCTCAGTGTGTATGCCCAGCAGTGGGATTGCTGGATCATAAGGCAGTTCTATTTCCAGTTTTTTAAGGAATCTCCACACTGTTCTCCATAGTGGCTGTACTAGTTTGCATTCCCACCAACAGTGTAAGAGGGTTCCCTTTTCCTCCACACCCTCTCCAGCATTTATTATTTGTAGACTTTTGGATCGCAGCCATTCTGACTGGTGTGAAATGGTACCTCATAGTGGTTTTGATTTGCATTTCTCTGATAATGAGTGATGTTGAGCATCTTTTCATGTGTTTGTTAGCCATCTGTATGTCTTTTTTGGAGAAATGTCTATTTAGTTCTTTGGCCCATTTTTTGATTGGGTCGTTTATTTTTCTGGAGTTGAGCTGTAGGAGTTGCTTGTATATTTTTGAGATTAGTTGTTTGTCGGTTGCTTCATTTGCTATTATTTTCTCCCATTCTGAAGGCTGTCTTTTCACCTTGCTAATAGTTTCCTTTGATGTGCAGAAGCTTTTAAGGTTAATTAGGTCCCATTTGTTTATTTTTGTTTTTATTTCCAATATTCTGGGAGGTGGGTCATAGAGGATCCTGCTGTGATGTATGTCGGAGAGTGTTTTGCCTATGTTCTCCTCTAGGAGTTTTATAGTTTCTGGTCTTACGTTTAGATCTTTAATCCATTTTGAGTTTATTTTTGTGTATGGTGTTAGAAAGTGGTCCAGTTTCATTCTTTTACAAGTGGTTGACCAGATTTCCCAGCACCACTTGTTAAAGAGATTGTCTTTAATCCATTGTATATTCTTGCCTCCTTTGTCGAAGATAAGGTGTCCATATGTGCGTGGATTTATCTCTGGGCTTTCTATTTTATTCCATTGATCAATATTTCTGTCTTTGTGCCAGTACCATACTGTCTTGATAACTGTGGCTTTGTAGTAGAGCCTGAAGTCAGGTAGGTTGATTCCTCCAGTTCCATTCTTCTTTCTCAAGATCGCTTTGGCTATTCGAGGTTTTTTGTATTTCCATACAAATTGTGAAATTATTTGTTCTAGCTCTGTGAAGAATACTGTTGGTAGCTTGATAGGGATTGCGTTGAATCTATAAATTGCTTTGGGTAGTATACTCATTTTAGTGGGCTTCCCTGGTAGCTCAGTGGTAAAGAATCGACCTGCCAATGCCAGAGACACAGGGTCGATCCTTGATCAGAGAAGATCCCATGTGCCTTGGAGCAACTAAACTCATCCACCGCAACTACTGAGCCTGTGTTCTAGAGCCTGGGAATTACTACTGCTGAGCCCACGTACCACAGCCACTGAAGCCTGTGCATCCTAGAGGCTGTGCTCTATAACAAGAGAAGCTACCACAATGAGAAGCCTTTGTGCAACGAGGGAGTAGCCCCCACTCTGCAAATAGAGAAAAGCCCACGCAGCAATGAAGACCTAGCACAGCCAAAAAATTAATTAATTATTTAAAAAAAATTTAAAATCAGCTAAGAAATCTTACATTTCCCTGTGGGTTGTGAGTACCTGTATTAACCTTACTTCTGTGTTACCTGTTAACACATTACTGACCAAAGACATATTAATATGTCTTTTGTTACCTGAACATTATTGACTGGAAATGTGAGAGTGATATAATTTACGTCATCATGCGAAGCTGTTAGAACTTAAAATTGGTCAAGGGTTCATTATGCAAAACTTAACGATTGTTGTTATCATTCATATTTTGCCCCATTAGCTTCTTGTCCCAACTTGTGTATATTATAAACACAAGTTTATTACCATAAAATTTTTAAAAATGATGCATAGTGAAATTTTGAGTGAAGAATTTGTCAATGAATTTTATGCAAATTCTTTCTCTGATTGTCTGAGTGACATGTATACTTTAGTATCTCGTAATATGATAGTTTTTCCAAATATAGTTCTGATTCAGATGATGTGAAAATTAGACCAACAAAAAGACAAAATATCTTAGTGATTGATTCTGATACGGAAAGTGAAAATGAAACTCATTGTGCTGGAAGAGACTTTATATAGGTGTCAGGTGTAATTATTGAATGTAATAACTCGCAAAGTGTTAGTGAAGTAACATATTAATTTTTGGCCAGTCAAAGCAAAAATCACTGTCCTACAGGCTTTAGTTTCTGCGAAAATCCCCCAGTCAATAATGACTTAATATGTAATGTTAAACATAAATTACTTTGATGCATCTCCCCTTTCAAATAAGCACTGTGAGAGCCCGCCTCTAACCTGCCTTCTCTTTGGCAGTATTATTCTTCTCAATTATAGCCTGAGAAAAGGCCTAAGTCTCTGAATTCTTCTTCCATAATTATGTTAAGTCCCAAGGCAACAGGGCTTCCCTGGTGGCTCAGCAGTAAAGAATCTGCCTGCCAGTGGAGGAGATGGGAAACGTGGGTTTGATCCCTTGGTCAGGAAAATCTCCTGGATAAGAATATGGCAACCCGCTTCAATATTCTTGCCTGGAGAATCCTATAGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTGACAGAGAGAGTCAGACATGACTTAGCAACTAAACAACAACAACCCAAGGCGACATGGATCAGAGAGAGAAAGGAATTCGGACATCAGGAGCTTCCGGGTTGATGCTGTAGCTACATTTCAAAATCCGTTAATGACTGTAAACTTAAGTCGCCCATAAGGGGAATCTGTTCCAAACATGGAAGGGAAGTGCGGGGAATATTTAAGTTTTCAAGCAAAAGGGAACTTGCATGCCAACAGGTAAAAGCGGGAAAGCAGCCCAGTTAGGAGTTGTGGACTGTTGAAGTCAATGTTTCCTTGCAACCTTGCCTCAG
Seq C2 exon
GGTGAAGCTGAGTTTGCCCGCATCATGACCCTGGTGGATCCCAACGGGCAGGGCACCGTCACCTTCCAGTCTTTCATCGACTTCATGACCAGAGAGACGGCTGATACCGACACGGCCGAGCAGGTCATCGCGTCCTTCCGGATCCTGGCTTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009696:ENSBTAT00000012786:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(32.3=100)
A:
NA
C2:
PF138331=EF-hand_8=PD(47.7=58.5),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]