DreINT0025705 @ danRer10
Intron Retention
Gene
ENSDARG00000071090 | actn2b
Description
actinin, alpha 2b [Source:ZFIN;Acc:ZDB-GENE-051127-39]
Coordinates
chr17:20102567-20105702:-
Coord C1 exon
chr17:20105637-20105702
Coord A exon
chr17:20102726-20105636
Coord C2 exon
chr17:20102567-20102725
Length
2911 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
3' ss Seq
CTTGTGTGTGTTTGCTTTAGGGA
3' ss Score
11.03
Exon sequences
Seq C1 exon
AAGAAGAACGGGGGCATGGATTCTGATGACTTTAGGGCCTGTCTGATCTCGATGGGTTATGATCTG
Seq A exon
GTAGGGCTTTATTTAGGGTTTACCGATTACAAACTAAAAATAATTGTAATCACTCATTTTGATCTTGTTGTTAGTAAAATATTTGAAGAGTTCAGACGAAAAACCTCTTAGTGCGGTCTGAAAATTATCTAAAATTAGTGTTTCTCTGAGACTCCTGTGTATAGGTTCCGTAATTTCACTGTAATGGCAAAGAGTCTGTTTATTTCATGGCCTTTAAACTGAAATAACTGAACATAAACTCAGGAGAAAAATGCTCATTTTAGAAGAGAATTCTAGACGGCACAACGGAGGCTTTTGCATCTGAACTTTGCATGTCATCTTTATAATTGAATCTTCTTTGGCTTAATTTGAACTTTTCTGCCATTGACCTTTTTAAAGATAAAATCCAATACAATTTTGAAAGATTCACGCTTAAATCAAAACAGAAGCTATTTTGCCAATGTAAGATAAACTTTATTGAAAAAACAATAATCTCATTATTTTGCACAGTTATGTTTATCAGAAACATTGCGTTCCAAGACAAAAAGGGGTTATCAAATAATGAAAATGTTATTGTTTTTCCTCTGTTTTGTTTATTTTAGTTTCTTTTTTTCCCAAACAGCTAAATAATGACCATCATTCATTTTTTTTACCACGATTTTCCAAAGACATCTATTAAAATGTAATTATTATGTAGCAGCTGTATATATACTTATATATATATATCTTTAGTTTTTGACCAATTTCATTTAAAAAGCTCTCTGCAACTCTCATATGGTCGCCCACTGAATCTAAGCAGGGCTGTGTCTGGTCAGTACCTGGATAAGAGACTACATAGGAAATCAAGGTTGCTGCCGGAAGTGGTGTTAGTGAGGCCAGCAGGGGTTTGCTCAACCTGCAGCCTGTGTGGGTCCTAAAGCCCCATTTTAGTGGCGGGGACTCTATACTGCTCAGTGAGCGCTGTCTTTTGGATGAGACGTTAAACCGAGGTCTCGAGTCTCTGTGGTCGTTAAAAATCCCAGGATGTCCTTCGAAAAAAGTAGAGGTTTAACACTGGCGTCCTGGCCATATCTGCCCACTGGCCTCTGCCCATCATGGCCTCCTAACCCTCCCCATATCATAATTGGCTTCATCTCCTCTCCACCAATCAGCTGGGGCCTCATGTCTGAAGACTTGCGTGGAAATCATACTAGTGCATTGCGTACGCACAAAGCTGTAAATGTGCGTACGCAGAAAAAAATTCAGATGTATGAAACACTACGTACGCCGAATCTCATGCATATTCTTTTGTTTATCTGAATGAACGTGAAACTGAGCGCAACATGCACTAGCGCAAAACCCCTCCCTGCCTCCTCCCCCGTATGAATATGCTAATGACTATGTAATGGTAAAACCCAACGAAAAAGCAAAGGCAAAAGCAAGCAAAAAGAGAAACTTTGAACAGAATGTGAATTGGAGGTGCTGCTTTCGGAGGTAGACCGGAGAAAAGCGGTGTTATTTGCAAGTTTGTTCTCCGGAATTAACAACAAAAGAAAAAAATAGAATGGGAGAGTTTAGCTGATGCGGTTAACACAGTTGGGTCTGAACATCGCACTGAGTGAATTAAAGAAGAAATAGTGTGGTTTATAAATGTAAAATGTTGCGGCACCCGTAACAGTCTCTGTGGCGCAGCTTGTAAGACACATGCCAACATATTTTGACACGTTCGAGCATGAACTCTGTTCGAATCCAGCGTCTGATGAACTATTTCTTCTTTTTTTCCCCCGCTACATATCAGATTTTGCCAACTATTTATCACGAGAAAGACAAGTAGGAATCATTAATAAGTTTGTGCATCATATTTTTTTTTTCACATCTATTGAATGGAAATGTTTCTGATTCACGCATGCAAATTCATCTTCAGATAGTGTCTTTATAGCAATGTGCGTGCAGTAGATTGCTCAGATTACATTGGGAAAACAGGCGACTGCTGCAAATTGTGCTTTAATGTTTAGCTGGTCAACTGTATAGTATGGAAACCTTATATACCTGCTAGATGAACCCGTCTCATACAGCTGCCATTGCAAGGCTCAAAGACACTTTGTAGAGAGGAATTTAACACAACTGCCTATAGGAGTTGCCAATGGAAATAAAACAGACACGCACAAAAAATGTGCGTACGCCAGCCAGAAAGCTGCCGTGAAGCTGCGCACATTCCCACGTTCAGTTCATTGTTAGTAAATCCAAACGTGAGCGATTCTGAGTGTGAAACCTGGTGTACGCAAAGTTTTTTTGCGTACGCAGCGTTGATACATGAGGCCCCTGGTGTGTGGTCTGGCACAAAATGGCTGCCATCGCATCATCCAGGGGGATGCTGCACACTGCTGGTTGATGTGGAGATTCCCCCCCAATGTGTAAAGCGCTTAGAGTGCCAAGAAAAGCCATACTTTACATAAATGTAAGGAATAATAATAATAATAATTATTATTAAAAATCTTTTTTTTTTTGATAAAACAGATCTAAAAAAAGGCATTGTATTGTGATCAAGGACAACACATACACTTAAAACACAAATACACTTCATTGAACATGTGCACATAGATATCACCCCTATACTATGTAACTGTAGGCTAACTATGTTTGTATATAATAAGTTTAACTGTTAAAAGCTTTTAGTTACTAGTTAGTTAGTTATTGGCAACTAATAAATTTTGGTAACTAATAATACCTTTAAATATTCAGAATTTGATGGTAATGCCATAATGGGCACCTTTTGTAAAGCTGCTTTGGAACAATATTTATTGTGAAAGCGCTATATAAATAAACTTGAATTGAATAGACGGATCATGATGGATGTGGAATAATGTTTTAAATAGATTTCTATTTACATTTTCAGAAATAAAAGTATTTCGTTTCTCTGGATGTACTGTACTCTTGTGTGTGTTTGCTTTAG
Seq C2 exon
GGAGAGGTGGAGTTTGCTCGGATCATGATGCTGGTGGATCCAAATGCTTCAGGCAATGTGTCGTTCCAGTCCTTCATTGATTTCATGACTAGAGAGACAGCAGACACAGACACAGCTGAACAGGTCATTGCTTCCTTCAAGATCCTCGCTGCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071090:ENSDART00000138911:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(37.7=90.9)
A:
NA
C2:
PF138331=EF-hand_8=PD(58.5=58.5),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]