BtaINT0013336 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022244 | ACTN3
Description
actinin, alpha 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:165]
Coordinates
chr29:45238518-45239296:+
Coord C1 exon
chr29:45238518-45238668
Coord A exon
chr29:45238669-45239187
Coord C2 exon
chr29:45239188-45239296
Length
519 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGC
5' ss Score
5.3
3' ss Seq
AACCCCCTTCCCATTCCCAGTGA
3' ss Score
7.09
Exon sequences
Seq C1 exon
GAAAGGAGGACATGCTGAGCCAGAGGGACTACGAGACGGCTTCGCTGCAGGAGGTGCGGGCCTTGCTGCGGCGCCACGAGGCCTTCGAGAGCGACCTGGCGGCGCACCAGGACCGCGTGGAGCACATCGCTGCGCTGGCCCAGGAGCTCAA
Seq A exon
GTAGGCATGGAGTCTGCTGGGCCCACCGCGGGCAGGGAACGACACCCCTCGGCCTCAAGCCCCGCCCCTCGGCCTCAAGCCCCGCCCCTGCTCCCAAAGCCCTCCAGACCTTTCACTCTTTAATAACCCTACCTTGGTACCCCTGTCCTTCCCAGCACCACTTGCTCTGCCCTCCTCCTGTAACCCTGTCCCCTAAGCTGGCGTCTCCTTGCAGCTTTGGGCCGGCCAGGCCTTCACCATAGCCTTGGCCTCCTGCCACGTCCTTCCTGTAAACCTGTCCGGGAAACTCCAGGCCCCGCCCCTCCTCCCAAACTTTTCCAGGGACTGGAGCTGAGGACCCCCTTCTCCTAGGCACGCACTGAGAAGGCCCTGCTCTAGGAAAGCCCTGTTTCACCCCCATCTACCCTGGCTCCTTTATGCCTTCACCACCCCTGGGCCCAGAGTCCTACCTGAAGGGACAGTCAGGCAGAAATCTGGGCTGGAATCTGGCTCCGCGAACAACCCCCTTCCCATTCCCAG
Seq C2 exon
TGAGCTGGACTACCACGAGGCAGCCTCGGTGAACAGCCGCTGCCAGGCCATCTGTGACCAGTGGGACAACCTGGGCACGCTGACCCAGAAGAGGCGGGATGCACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022244:ENSBTAT00000030030:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(47.2=100)
A:
NA
C2:
PF0043516=Spectrin=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGAGGACATGCTGAGCC
R:
AGTGCATCCCGCCTCTTCT
Band lengths:
256-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]