RnoINT0012629 @ rn6
Intron Retention
Gene
ENSRNOG00000019745 | Actn3
Description
actinin alpha 3 [Source:RGD Symbol;Acc:621792]
Coordinates
chr1:220124205-220125000:-
Coord C1 exon
chr1:220124850-220125000
Coord A exon
chr1:220124314-220124849
Coord C2 exon
chr1:220124205-220124313
Length
536 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGC
5' ss Score
5.3
3' ss Seq
ATTCCCCTTTTGCCTATCAGTGA
3' ss Score
7.82
Exon sequences
Seq C1 exon
GCAAAGAGGAAATGTTAAACCAGCATGACTACGAGTCAGCTTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACTTGGCTGCACATCAAGACCGGGTGGAACACATTGCAGCCCTGGCCCAGGAACTCAA
Seq A exon
GTAGGCGTGGCCAGAGACCCTGCCCCAGCCCCTCCTCATTGAGCCCCGCCCTTCTCTGTCAGACCCTTGGTAAACAAGTGATTGCATCCTGTTTCCTCTCACACCCTTACTTGCTTACGCCCTTCCTGAAAAGGCCATCCCCAGCTCCTTACCCACTTTGCTGCCTTTACAGTTATCCATTGGCACTCATCTGTCCCACTCCATGTGAAGACCTGCCCCCCCACAACCAGGAAACCCCTTCACCTCAGGATATTAGCCCATCACCCCAGTCAGCCTTGGCTTCACCATCCACAACCTCAAGTTTCCCTTCTCCCACAATCCTGCTTCTGTAATACCAGGAGCCACATCGGGACACTATCAGGGACTAGAGCTGAGGGTCCTGGGTGCCAGTCTTCCTGAAGCAACACAGAGACCCCTGGAAGAATAGCTCCTCTGCCCCATGCCCCACCCGTGTTCTGGTGGCACTCCTGCACCCTCACCTTGCCTTGGGTTCCACCAGGGTCTGCCTCTACACTCATTCCCCTTTTGCCTATCAG
Seq C2 exon
TGAGCTGGACTACCATGAGGCAGCCTCGGTGAATAGCCGCTGCCAAGCCATCTGCGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGATGCACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019745:ENSRNOT00000026812:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(47.2=100)
A:
NA
C2:
PF0043516=Spectrin=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAGGAAATGTTAAACCAGCA
R:
AGTGCATCCCTCCTCTTCTGG
Band lengths:
256-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]