BtaINT0013339 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022244 | ACTN3
Description
actinin, alpha 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:165]
Coordinates
chr29:45239795-45240559:+
Coord C1 exon
chr29:45239795-45239977
Coord A exon
chr29:45239978-45240424
Coord C2 exon
chr29:45240425-45240559
Length
447 bp
Sequences
Splice sites
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
3' ss Seq
CACCACCACCCTCCCTCCAGGTC
3' ss Score
10.34
Exon sequences
Seq C1 exon
AGCTTGGTGACAGCACACGACCAGTTCAAGGCAACACTGCCCGAGGCCGACCGAGAGAGGGGTGCCATCCTGGGCATCCAGGGTGAGATCCAGAAGATCTGCCAAACGTACGGACTGCGGCCCAGCTCCACCAACCCCTACATCACCCTCACCCCGCAGGACATCAACACCAAGTGGGACACG
Seq A exon
GTCAGTGCCGCCAGTGGCCTTTCCCCGCCTCCCTCCTGCTCAGACACCTTCTAAACCACCCTGAGAATCTCAGGTGTCTGAGACACAGAGGATCAAGTCCGCCTCCGGATCTGTGGTCTGCCACAGACTGTACGTGGCATTGGATAGGTCCCCTTGCCTGACTTGGCCCTCTCTGTAAAATGGCCGTAACAGCATTTTCCTGTTGGGCCTGATTGAAGCAGAATTAGATCTGGTGTGGGGGCCAGATTGTTGTACAGAACAATCTAAGTTTGTTAAGAGTGTCGGCATGGGCCCTCATTTACAGCCAGGAAATGAGCAGAGAGAGGCTGAGTGACCTGCTCAGAGCTTGCCCCCTCCGCAGAGCCCCAGGCTCAGAGTAAGGAGCCCTGTGAGGGGCTGGAGCCCTCCCCTCCTGAGCTGCCCCTGACACCACCACCCTCCCTCCAG
Seq C2 exon
GTCCGAAAGCTGGTACCCAGCCGTGACCAGATGCTGCAGGAGGAGCTGACGCGGCAGCAGGTGAACGAGAGGCTCCGGCGGCAGTTTGCAGCCCAGGCCAACGCCATCGGGCCCTGGATCCAGGGGAAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022244:ENSBTAT00000030030:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(53.6=100)
A:
NA
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGGTGACAGCACACG
R:
CTCCACCTTCCCCTGGATCC
Band lengths:
318-765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]