MmuINT0010452 @ mm9
Intron Retention
Gene
ENSMUSG00000006457 | Actn3
Description
actinin alpha 3 [Source:MGI Symbol;Acc:MGI:99678]
Coordinates
chr19:4863410-4864153:-
Coord C1 exon
chr19:4863971-4864153
Coord A exon
chr19:4863545-4863970
Coord C2 exon
chr19:4863410-4863544
Length
426 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
ATGACCACTCTCCTTCCCAGGTC
3' ss Score
8.79
Exon sequences
Seq C1 exon
AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA
Seq A exon
GTGAGTGTAACCAGCAGCCCTGCGTGGTCCCCACTTGTTCTCGCACATTTGATTCAATGAGGCCTCTGATGTCCCAAGATATGGGGAGTAACTATAGCCCACTCCCATCCATCTGGGGCCTGCCATAGATAACACGTGGCACTCATAAGCCTCCAACATCATTCCTCTATCAGGACTGACAGGCATATAGAAAGAATATTGTTTGCGTACCATCCACAAACCCACCTATTTGTCACTGGTCCCCATTTTACAGATGAGGAACCTGAAGCCTATAAATATAAAGCCATTTCCCTCAGAGTTTACCCACATATCCCATTTTGACTCATGAGAATAATAACTGAGGTTTGAGGGCCTGAAGGACATCTTGCCTCAGCACCATCTTCTGGCCCCCACAGTTGGCTATGATATGACCACTCTCCTTCCCAG
Seq C2 exon
GTCAGAAAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006457-Actn3:NM_013456:15
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.246 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(53.6=100)
A:
NA
C2:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAACAGCACACGAACAGTT
R:
TCCACTTTTCCCTGGATCCAG
Band lengths:
312-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: