BtaINT0013345 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022244 | ACTN3
Description
actinin, alpha 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:165]
Coordinates
chr29:45241879-45242282:+
Coord C1 exon
chr29:45241879-45242037
Coord A exon
chr29:45242038-45242123
Coord C2 exon
chr29:45242124-45242282
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CAAACCCTCTTCTCCCCCAGAAC
3' ss Score
9.36
Exon sequences
Seq C1 exon
GGGGAGGTGGAGTTCGCTCGCATCATGACCATGGTGGACCCCAACGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATCGACTTTATGACCCGAGAGACAGCCGAGACAGACACGGCTGAGCAGGTTGTGGCCTCGTTCAAGATCCTGGCGGGAGACAAG
Seq A exon
GTGAGTCCCTGGCGGGGGTCGGGGGAGCTGGTGGGTGGAGGGTGGGGACTGGGACCTGGGGGCCCTCAAACCCTCTTCTCCCCCAG
Seq C2 exon
AACTACATCACCGCCGAGGAGCTGCGGCGGGAACTCCCGGCGGAGCAGGCCGAGTACTGCATCCGCCGCATGGCGCCCTACAAGGGGGCTGGGGCTCCAGCTGGAGCCCTGGACTACGTGGCCTTCTCCAGTGCCCTCTACGGGGAGAGTGACCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022244:ENSBTAT00000030030:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(35.4=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
A:
NA
C2:
PF087265=EFhand_Ca_insen=PD(70.1=88.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTGGCCTCGTTCAAGAT
R:
ACTGGAGAAGGCCACGTAGTC
Band lengths:
169-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]