BtaINT0013482 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019337 | ACVR1C
Description
Bos taurus activin A receptor, type IC (ACVR1C), mRNA. [Source:RefSeq mRNA;Acc:NM_001192879]
Coordinates
chr2:38582558-38584189:+
Coord C1 exon
chr2:38582558-38582725
Coord A exon
chr2:38582726-38584032
Coord C2 exon
chr2:38584033-38584189
Length
1307 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
ATTTATCTTATGCTTCATAGGTA
3' ss Score
7.32
Exon sequences
Seq C1 exon
ACAATGGAACCTGGACTCAGCTTTGGCTTGTCTCTGAATATCATGAACAGGGCTCCTTATATGACTATTTGAATAGAAACATAGTGACCGTGGCTGGAATGATCAAGCTGGCGCTATCAATAGCTAGCGGTCTGGCCCACCTTCATATGGAGATTGTTGGTACACAAG
Seq A exon
GTACGTATTTTCTAACTGTTTTTTCTCCTTGAATATGAAGTTAGAAGCACTAAGTTGTATTTTAGTGTTCAGTTAGGTTTTAGTTTATTACAAAAAGTTATCAAATGTAAAGAAACACTAAAAGTACTTTATAAAGCTGAAGATTTTGGCATGATATAGCCAATTCTTACCTACATACTCATCATTTTGTATACTAGCCATAATAATATTTTTATTCCAAGCATCTCTATTGTCACCATTTAGCATATGTATCTGAGAGATCTTGCTTTGGTAGCAAATTTTCCATTCTCAGAGGTTACAAATAATTGAACTGTTTTTAAAAAATTGGAAAGGGTAAGGTGATCTTAAAAATACTCCTATACCATGTACTTGAAAGCCAAATAATACACACTGTCTCATCTATTTATTGAGTTAATAGAGAATTGGCTCTAGAAAGTTGTTCTTGTCACTGTAGTGCTTCTCAGATTTGGATTCTTGATCCCTTTAAATGCTTAAAAATTATTGAGGATGCAAAAGTTTGTGGATGTGGGTTATCTCTGTTAATATTTACTATATTAGAAACTAAAATTGAGAGATTTAAAAATATTTATTAATTTACTTAAAGTACAATAATTAATAATTAAATATTAAAATAACAGTTTTAAAACATAATTTTTATAATATAAAACCCAATCTAGCTAAAATAATGGTTTTGTTTTACACATTTGCAAATCTCCTTAATGTCTGGATTTTCATACCTGTTCTTCATTTAGTCTGCCCCAGTATGTTGTTATTGGTTAAAGTATGTAAAGAAAAGGTGACATCACCCAGATATGTCATTGAAAAAGAGCTTCAAGGACCGCCAGGGATCTTTGGGCCAAATTTGAGGACTTCTGTTCTAGGATAATAAAAGTTTGAAACTTGTTTTTTAGGAGAATTTTTGCTATGTTCTTATGTGGATGTAATAATGCTAATACTTTCCCTACTTATTCAACAAATATTTATTAGTGGTTACTAAATGTCACCTAGTATTCTAAGCAAGGAGGGATGGTAATGAGTAAGACATAACCACTGTCTTATGTAGCCTACCGTCTACTTGGGAATGACAAATAATGCCTACAAATAAATAAGATAACTCAGCGATAAAAGCTGTGAAGAAGGCAAAATGGGGGTAGTCTGCTGAGGGTGAGTTGGGATGTTGATTAGGGGTCAGGGAACACTGTTCTTAGAAGGTAACATCTGAGCCAAGTCTTTCAAAATGAATCCTTTTGGACAGATTCAGTCTTCGGTAATGGAAAAAGTGAATATATTTATCTTATGCTTCATAG
Seq C2 exon
GTAAACCTGCTATTGCTCATCGAGATATAAAATCAAAGAATATCTTAGTGAAAAAATGTGAAACTTGTGCCATAGCAGACTTAGGGTTGGCTGTGAAGCATGATTCAATACTGAACACTATTGACATACCTCAGAACCCTAAAGTAGGAACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019337:ENSBTAT00000025753:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.4=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGGAACCTGGACTCAGC
R:
GGTTCCTACTTTAGGGTTCTGAGG
Band lengths:
320-1627
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]