DreINT0025801 @ danRer10
Intron Retention
Gene
ENSDARG00000018968 | acvr1ba
Description
activin A receptor, type IBa [Source:ZFIN;Acc:ZDB-GENE-980526-527]
Coordinates
chr23:27878823-27879234:-
Coord C1 exon
chr23:27879067-27879234
Coord A exon
chr23:27878980-27879066
Coord C2 exon
chr23:27878823-27878979
Length
87 bp
Sequences
Splice sites
5' ss Seq
AGGGTGATT
5' ss Score
3.01
3' ss Seq
ACCATTATGATCTCCTACAGGGA
3' ss Score
8.36
Exon sequences
Seq C1 exon
ACAATGGCACATGGACACAGCTGTGGCTAGTGTCAGACTACCATGAGCATGGCTCATTATTTGACTATCTCAACCACTACTCCGTCACAATCGAGGGGATGATCAAGTTATCGCTTTCAGCCGCCAGCGGTCTGGCACATCTGCACATGGAGATCCTGGGCACACAGG
Seq A exon
GTGATTAACAAAATAATATTCTCCAGACTATAATAATTTACAATTTGTCAATTCCTGGACTCACTAAACCATTATGATCTCCTACAG
Seq C2 exon
GGAAACCAGGCATCGCACATCGTGACCTCAAATCCAAAAACATCTTGGTGAAAAAGAATGGTACTTGCGCCATAGCAGATCTAGGGCTCGCTGTACGGCACGAGTCTATCACTGATACTATAGACATTGCACCCAATCAGAGGGTGGGCACTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018968:ENSDART00000023094:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.4=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCGTCACAATCGAGGGG
R:
CTGCTATGGCGCAAGTACCAT
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]