BtaINT0013474 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013555 | ACVR1B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSQ2]
Coordinates
chr5:28044097-28045695:-
Coord C1 exon
chr5:28045528-28045695
Coord A exon
chr5:28044254-28045527
Coord C2 exon
chr5:28044097-28044253
Length
1274 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTGTTTTTCTCCTTCACCAGGGA
3' ss Score
10.27
Exon sequences
Seq C1 exon
ATAACGGCACCTGGACACAGCTGTGGCTCGTGTCGGACTATCACGAGCACGGCTCCCTGTTTGACTATCTGAACCGGTACACGGTGACCATCGAGGGGATGATCAAGCTGGCCTTGTCTGCCGCCAGCGGGCTAGCACACCTGCACATGGAGATCGTGGGCACCCAAG
Seq A exon
GTGAGTGGGGCTGCTGAGCAAGCGTCCTGTCCCCGTCGAGGAGCTCCTGTGCACTGAGCGAGCCGGAGCTGGGCCTTAGGAATGGGGGTCTGGTCTAAGGGAGAGGGGTTTGAGCTTCACTTGAGCAAGAACGAGAGGTGCCTCTGCCTTTAGAGTGATTCATGGGGTCACAAAGAGTCGGACACGACTGAGCGACTGAACTGAACTGAACTGAACTGAGGGACTTCTGTGGGAAATGTTGATTGTTTGTTCCCCATGTCCTGGCGTGGTTGGTGGTTGGGAAGCTGGTGTTAACTGAGAGATCGTCTCAGATGCCCACAGTTCACAGGAAAATGAAGGGACTGAGAAGATGGATTGAACCACTGTGCCGAGATTCAGTTTAGTGAGCACACGCACTCATCGTTGGGTCACCTGGATGGTTAGACACTGGGTCTACTATCTGGCAGGGTTCTCCTGGAGGAACACTCCCTCGGGAGTCCCTGCTTGTTGACTGACTCAGCCTTTCTCGAGCTCCCAGGTCTTGGCAGGTGGTACGTTGCTTCCTGGTGCATGGTCAGTGGGGCAGGAGCTCTTTCTGTGTGTGATCAAAAACCAGCCATGAGAGTTTGACACTATCCCTAGACTCTGCAGAGAAAGTGGTGGTTCTTACCTCCCCTGTTTGGTTCTGAGAACCTAGCCAGTGCAGCAGCTTTTTCTCAAGTCCTCGACTATGCTGTACAGGAGTATATGAGTTCAGGGAAGGTGAACAGGAATAGCATTCATAAAGTAATAGTAGCTAATCCGCATGCCTTTCTAAGCGCTTGGCTCACCTACATTAATATGTGTAACTTTCACAGCATTCCCATCAAGTACTGGTGTTTGGGCTTCCCCGGTGGTGCTCGTGGTAAAGAGCCTGCCTGCCAACGCAGGAGACATCAGAGACGTGGGTTCAGTCCCCGGGTCGGCAGGATCCCCTGGAGGAAGGCGTGGCAGCCCACTCCAGAATGCTCGCCTGGAGAACCCCAGGGACAGAGGAGCCTGGTGGGCTGCAGTCCGTAGTGTCCCAAAGAGTCGGACGCGACTGAAGCCACTCGGCACGCACGCACACACTGGTGTTTACTCTGATTTTATGGATGAGGTGGCCAATGTATAGACAGATTAAGTTGCATTTACAGGGTTACTGGGTTAGTGGGGGGCAAAACCAGAACTGAAACCCACATATCCGGCTGCAGAGACTATGCTTTAAACGCTTATGCTGTCTTTCTCTAAAGATCCCTGTTTTTCTCCTTCACCAG
Seq C2 exon
GGAAACCTGGAATTGCTCATCGAGACTTAAAGTCAAAGAACATCCTGGTGAAGAAAAATGGCATGTGCGCCATCGCAGACCTGGGTTTGGCTGTCCGTCACGATGCGGTCACAGACACCATTGACATTGCCCCTAACCAGAGGGTGGGAACTAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013555:ENSBTAT00000046665:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.4=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACGGCACCTGGACACAG
R:
AGTTCCCACCCTCTGGTTAGG
Band lengths:
320-1594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]