GgaINT0000953 @ galGal3
Intron Retention
Gene
ENSGALG00000014631 | ACVR1B
Description
NA
Coordinates
chrE22C19W28_E50C23:8429-9237:-
Coord C1 exon
chrE22C19W28_E50C23:9070-9237
Coord A exon
chrE22C19W28_E50C23:8586-9069
Coord C2 exon
chrE22C19W28_E50C23:8429-8585
Length
484 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGA
5' ss Score
6.84
3' ss Seq
GTCTTGTTTTGCTCTCTTAGGAA
3' ss Score
9.94
Exon sequences
Seq C1 exon
ACAACGGGACGTGGACACAGCTGTGGCTCGTCTCCGATTACCACGAGCACGGATCTCTCTTTGACTACCTGAACCGCTACACGGTGACCATAGAGGGGATGATCAAGCTTGCTCTGTCTGCTGCCAGCGGGCTGGCCCACCTGCACATGGAGATCGTGGGTACTCAGG
Seq A exon
GTATGAGCGGGGTTTGGAGACGTGCTGGGAGCTCCCGAGGGGAGAATGAAGCAGAGCTGGAGAGGGGTGCGAATGCGGTTGGGTCCGCCTGGTGGGCATTGGGCTGATGGCTTTGGCTGCTGTGTGTAGCGTTGACCTCTGTTGGGTCCTGGGATTTCCATCAGCATTTCCCAGCAGAGCAGCTGCAGTGTTAGGGTGCAGATGTGAGGTCAGTGCGGGCAGCAGTGGTGATCCACCCCTCACATCCACATGGGAGCGTGGAGCTGGAATCCCTCTGCAGGCCTCGGGGTGACACTGCAGCCAACACGGGGCCTTTGCAGGCTGTCAGCACTGCTCTTTCCTTCGGCACTGAAGCGAATCCAAACAGGAAAGCGTGTCGCAACACCAAGAATTGTGCTCATGCCATGAGATCCGGTGCTGCCTCTGCGCCAGCACAGCCCTCCCCAGCCCGTGACCCCTGCCACGTCTTGTTTTGCTCTCTTAG
Seq C2 exon
GAAAGCCTGGGATTGCTCACAGAGACCTGAAATCCAAGAACATCTTGGTGAAGAAGAATGGCACGTGTGCCATTGCTGACCTGGGGCTCGCTGTGCGCCACGACTCCGTCACGGACACCATTGACATCGCCCCGAACCAAAGGGTTGGAACCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014631:ENSGALT00000020492:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.4=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGTGGACACAGCTGT
R:
CTTTGGTTCGGGGCGATGTC
Band lengths:
305-789
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]