RnoINT0012769 @ rn6
Intron Retention
Gene
ENSRNOG00000006934 | Acvr1b
Description
activin A receptor type 1B [Source:RGD Symbol;Acc:735207]
Coordinates
chr7:142847652-142848722:+
Coord C1 exon
chr7:142847652-142847819
Coord A exon
chr7:142847820-142848565
Coord C2 exon
chr7:142848566-142848722
Length
746 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GCCCGGCTTGTCTCTGCCAGGGA
3' ss Score
7.9
Exon sequences
Seq C1 exon
ACAATGGCACCTGGACCCAGCTGTGGCTTGTCTCTGACTATCACGAGCACGGCTCACTGTTCGATTATCTGAACCGCTACACAGTGACCATTGAGGGGATGATTAAACTGGCCCTGTCTGCAGCCAGTGGTTTGGCACACCTGCATATGGAGATTGTGGGCACTCAGG
Seq A exon
GTGAGTAGGAAGCCTGTCCATCCCCGTGTGGTCCTCCTCACTGAGGCAGCTGGGGACAAACTCTGGCAATGGTGGTTCCGCGTGAGGAACAAAGCTGCTAGCTGTATTGAGCAAGAACAGAATCTAAATGGGTTTCCTCATTGGCTAGCCCTCCCTAGGGCGAGCTATAAGATGCAGGCTCGGCTGCTGTTAATGCACGGCACAGACGTTTGCTAAGGAACAGCATGAACGAATGGAACTGAGAGAGACCAGCACGCCAGGGGCAAGCGTGTAACCGTCTCACGCTGAGGTCGGGCACGCCTTCCTTGCACAGCTTGTGGTGGCAAGGTGCAGCGCCCGCTTGTCCGCGTCCTGGATGAGGACCCAGGCTTTGCGCTCAGCTGTGCTGTTGCCTCCAGATCCCGGTGTGACCACTGGTGCTTGGTTGACCAGGGCAGCAGCTCTCACCAGCTGACTCCTGGGCTGATGGCGGCTCTGTGTGCTCATTGGTCACCTGGGCTCCTCCGGGGCTGGTGAATGGTGGAGAGATTTAATGTGAGTCAGTAAGTCAGTAACTATGTCATTGTGAGGCCTTAATTCTGGGAATAATTTTACCCTCTCCATGTCCCTGTGAGGTTCTGTTATTCTCACTCAGAGAGAAGTCTGAGCCTGAAGGACACAGGGCCAGGCTCAGCCCAGAGTCCTCTCAGAATCACGCACTTGCTGTGCACACACCTCCCTGAACATGCCCGGCTTGTCTCTGCCAG
Seq C2 exon
GGAAGCCTGGAATTGCTCATCGAGACTTGAAGTCAAAGAACATTCTGGTGAAGAAGAATGGCATGTGTGCCATTGCAGACCTGGGCCTAGCTGTCCGTCACGATGCTGTCACTGACACCATAGACATTGCTCCAAATCAGAGGGTGGGAACCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006934:ENSRNOT00000009345:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.4=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGCACCTGGACCCAG
R:
GGTTCCCACCCTCTGATTTGG
Band lengths:
319-1065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]