BtaINT0013985 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104391740-104392850:+
Coord C1 exon
chr11:104391740-104391820
Coord A exon
chr11:104391821-104392668
Coord C2 exon
chr11:104392669-104392850
Length
848 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TGACGGCCCCTCGCCCACAGCGG
3' ss Score
8.83
Exon sequences
Seq C1 exon
AGTACGTCACGTTCCTGACCGTCACCCCCAACCTCACCAGCATCTACATCATCAACCGCAGGCCTCTCTTCACACACCTGG
Seq A exon
GTGAGCTGGCCAGACCGAGAAGTCTGAGGGCACAGCCCCGAGGTGTCCTCCCTTCCGATGCCACCTGCAAGTTTGAGGGTCCCTCAAATGCCCTCAGTTGGGGGATTCACCAGGTGGACCCCCAGAACTCTGAGAGCTGTTAAACTCACGGTTACGGCTTATTACAAGGGGGCAGCCAAAGGAAGAGATGCTTAGGGTGGTGTCAGGGAGGGCTCTGTGTCCAGCCTCGAGAGCAACCACACATGCAGTGTGCTGCCAACCCCGGGAGCTCTCCTGAGCTCAGTGCCCGGGTGTCATGGGGACTTCCTTATGTCGATGAGGTTGAGGGACTGATTGATCGCTACCCGGACCATTCCGATCTCAGTCTCCAGCTTGGCTGAGGCTTGGTGACTCAAAGCCCCCACCCTAAATCACATATTTGACCTTTCACCCTAAACAAAGACGGATCAGGTCAGGCACAGGGCGCTGGTCAGACCCGTCTCTGGGGAATGCCGACCTCTCTACACCGTGGGTGCCCTTTGAATCTGGGTTGGGGTGCTCACCCTGAGGTCCTTGTGCCTGCCCTTGGTGAGGGAGCAGGTCCACAGTGCTCCCCGGGCTCCGGGAAGAGGCACAGAGTAACGGTGTGGGGAAGCCTCCGTCGGTCAGACACCCTGTGCGTGGGGCGCCAGGAAGGTCTGCTCCCGGGAGAGCGGGGGGCCCTGGGGCGGGCGTGGCAGGTGAAGCCCTGGACGGTGCATCCTGCCAGCACATTTGTCCCCTCTCCCTAACAGGGCCATCTGTGGGAGGGGGAGGTTCTGGCTCCCAGGGTGGGGGGCCCTGCAGTGCTGACGGCCCCTCGCCCACAG
Seq C2 exon
CGGTGAGGGTGCGTGGCCGCTACGTTGTGGCCGGAAACGGGAGCGCGTCTGCCAGCACCAGCTACCCCTCCCTCCTGGAGGACAACCGCGTGGAGTACAGGGTCACCCTGAGCGAGGACCGGCTGCCCCGCCGGGAGGAGATCCGCATCCGGGGCCCCACCCGGGACGACATGGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093:ENSBTAT00000020085:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACGTCACGTTCCTGACCG
R:
CTGGATCTCCATGTCGTCCCG
Band lengths:
263-1111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development