GgaINT1005465 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6915744-6916278:+
Coord C1 exon
chr17:6915744-6915824
Coord A exon
chr17:6915825-6916096
Coord C2 exon
chr17:6916097-6916278
Length
272 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGCAACTTTTGTTCTTCTAGCTG
3' ss Score
8.89
Exon sequences
Seq C1 exon
AGTATGTTACGTTTTTGTCCCTGCCTTATAATGCCACCTCAGTCCATGTTATCAATCAGAGGCCGCTCTTCACTCATTTGG
Seq A exon
GTGAGTTGAATGAAAAGGAGAGGTGGGAGTACAGGCAAAGCTTGAACAAGTTTGTGAAAACAAGCAGATAGGATCTGGGAGGGAAGTCCTGGATTATGCAGTTTGTTTGTTTGGGGATGCTCTCTTCTGGGAACTGATGGAAGCCATACTCTTTGGGATATCTGATTTAAATCAAACTGGTTTCTAGCAAATGGGCAATCTGTCGCTGCCAGCACTGAGGGATTCTGTCCATGCCATATCTCTTAACCTCACTGCAACTTTTGTTCTTCTAG
Seq C2 exon
CTGTGAAGGTTAAAGGTGAATATGTGGTTGCTGGAAAGGGAAAAATCTCACTGAATGTCACCTATCCCTCAGTTCTGGAGGACAGACAGATTGAATACAAAGTGTTTCTCACCAACCACAACCTCCCAAGCCTGGAGGAAATCCATGTGGATGGACCAATCCAAGAAGAAATTGAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(21.6=100)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(48.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACGTTTTTGTCCCTGCCT
R:
TCAATTTCTTCTTGGATTGGTCC
Band lengths:
252-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]