BtaINT0013990 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104395652-104396276:+
Coord C1 exon
chr11:104395652-104395834
Coord A exon
chr11:104395835-104396230
Coord C2 exon
chr11:104396231-104396276
Length
396 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GGGGGGTGGCCTGGGCGCTGGTG
3' ss Score
-5.96
Exon sequences
Seq C1 exon
CTGGGAGGCTGGAGACTTCGGCCCCTGCAGCGCCTCGTGTGGGGGTGGCCTGCGGGAGCGAGAGGTGCGCTGCGTGGAGGCCCGGGGCGGCCTGCTGAGGACTGTTCCCCGCTCCCGGTGCAGAGCGCTGGCCCCGCAGCCGGCGGCCGTGGACACCTGCAATTCCCAGCCCTGCCCCCAGAG
Seq A exon
GTGAGCACGGGGTGGGCAGGGCCCCCCAAGGCCAGATCCGGGCAGAGCCTCCCTGGCGGGGCTCGTCCCTGCACTGAGCCCTTCCCTTTTGGGGTGTCCCCTCTTCCCGAGGCCTCTGGCCAGCCCCTGCCACCCTCCCACCCAGGAGGCCCTGGACTGGCCAGTCCCCTCTCTTTGAACTTTTTTTCGAACTCGTGAGGACAGAGCAAACCCACAGATGTCCAGCCACAGACGTCACTCTGTCACTGCTGTTGTCCACCCTGCGGCGTTCCAGCTGACAGAGACTCATCAGTCTGATTTGCCGCTAGCCGTCTGGGGCACCCAAGCCAGTCCCCTCCCTCTCTGGGTCCCAGATTTGTCACCTGGGCAGCGGGGAGGGGGGTGGCCTGGGCGCTG
Seq C2 exon
GTGGTCCGCGGGTGGCCCTGGGCACCCTCCCTGTCCCCCGCATGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093:ENSBTAT00000020085:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGGCTGGAGACTTCG
R:
CATGCGGGGGACAGGGAG
Band lengths:
227-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development