MmuINT0011179 @ mm9
Intron Retention
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26846782-26848587:+
Coord C1 exon
chr2:26846782-26846967
Coord A exon
chr2:26846968-26848394
Coord C2 exon
chr2:26848395-26848587
Length
1427 bp
Sequences
Splice sites
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
3' ss Seq
CTGAGTTGTGTTTTCCTCAGGTG
3' ss Score
9.38
Exon sequences
Seq C1 exon
TTGGGTAGCTGGGGACTTCAGCCCATGTAGCGTGTCTTGTGGCGGGGGCCTTCGGGAGCGGTCACTGCGCTGTGTAGAGACCCAAGATGGCTTCTTAAAGACACTGCCACCTGCCCGGTGCAGAGCAGTAGCCCAGCAGCCAGCAGCAGAAGTGGAAAACTGCAACTCCCAGCCCTGTCCCACCAG
Seq A exon
GCGAGTATATCAAGGTGTGGTGGCTCCTTGGCTGGGCTTGTCCCTGCACTGAGACCCATCCTTGTGGAGCGCCCTCTCTTGCTGAAAGCTCTCATCAGCTCCATCCTGGTGATAGATGGTGGCACCTGAACCTTCTCACTATTCAAGAGGTGCTGGGTTGCTCATCTCCATCACTGAATTTCTAATACCTGGGTGATGTGGGGATGAGAGCTATAAGGATAGTGTGACACTGAACATAAAACTCATAGCATTAGTCATCACTGGCAACTCTCCTGCACTGACCATGTGACTGTGCCTTAAATGTCCTCGTCCAGACTGATCCTCACTTATTGGTCTGCCTGTGTCCAATGGGCTGGATGATCAGCATGGCTTCAGGCATGCTATCTGTCCAATGGGAGAGCCCTAGATTATTGGTGGCCCACTGATGGCTCTTCCTCTTCTCTCACACATGACCAACATTGCAATCCTATTCTTAGGTGCGGAGGTATGATTCGGTCTCAGCACCCTTGACAGCACAGTGCTCTAGACAGACATCATGCATTGATGCCATACAGTGAACCATGTGCCACCCCTCAACTGGTACTGTGAATGCACATGGCACCTGTTGCCAGGCAACAACGCATGAAGTGTGCTGTTGATAGATTTGGAGAGGAGGGCTTCTAGAAAACAGTTGAGTAGGGCTCTGCCTCCCCACCCCCTAGCCACAGGCAGAGTGTGTGGTTGGCATGCACAAAGTTGCTTTTTAATCTTTTTTTTTTACTTGAAATTACAGTTGTTTATTCATTTATTGTGTATGTGTGCATGCACACCCATGTGAGCAAGCCTTGGTGCAAGAGTGAAAGTCATGGGCTGGAGAGGTGGTTCAGCGGCTAACAGTACTGACTGCTGTACCAGAGGTCCTAAGTTCAATTCCCAGCAACCATATGGTGGCTCACAACCATCAATAAGGGGATCTGATGCCCTCTTCTGGTGTATCTGAAGAGAGTGACAGTGTACTCACATACATACAAAAAAAAAAAAGTTTAAAAAGAGAAAGAATGGAGGTCAGAAGACAACTTACCACAGTCAGTTTTCCCCTTCCCACCCCTGGAATCAGACTGTCTGTGTTGAGTCGGGCGTGGTGGCTCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACAAAAAACAAAAAACCCCAAAACAACAACAACAACAAAACCCCAAACAAACAAACAAACAAACAAAAATCCCAAAATACAGACTGTCTGAGTTGGAGGCCCAAGCCTTTGCTCACTGAGCTATCTCACTGTCCTGACAGAGTCCTTGTTGAGGAGAACTGAGTTGTGTTTTCCTCAG
Seq C2 exon
GTGGGAGGTGTCAGACCCTGGCCCTTGCATGTCATCTGCCTGTGAGGCAGGTCTGGACTCAAGGAATGTGACATGTGTGTCCAGGGCGGGTGACCCGGAGAAGCCAGAAACTGCAGGCCCCTGCCGCACCGACGAGATGTCAGCTATGCTGGAGCCCTGCTCCAGGAGCCTGTGTTCTCCAGGCTTGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-Adamts13:NM_001001322:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGTAGCGTGTCTTGTGG
R:
CTGACCCAAGCCTGGAGAACA
Band lengths:
358-1785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: