RnoINT0013304 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5545882-5547579:+
Coord C1 exon
chr3:5545882-5546067
Coord A exon
chr3:5546068-5547386
Coord C2 exon
chr3:5547387-5547579
Length
1319 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CAGCCCCGTGTTTTCTTCAGATG
3' ss Score
8.78
Exon sequences
Seq C1 exon
CTGGGTAGCTGACGACTTTGGCCCATGCAGCGTGTCTTGTGGCGGAGGCCTTCGGGAGCGGTCACTGCGCTGTGTAGAGGCCCACAATGGCTTCTTAAAGACGTTGCCGCCAGCCCCATGCAGAGCAGTAGCCCAGCAGCCAGCAGGAGAGGTAGAAAACTGCAACTCCCAGCCCTGCCCCACTGG
Seq A exon
GTGAGTAGACCAAGGTGGGTTGCAGCAGGGCTCCTTGGCAGGGCTTGTCCCTGCCCCGAGACCCACCCTTTGGGGGCCTTCTCTTGCCGAAGGCTCTCATCAGCTCCATCCTGGTGATAGACAGTGGTGCCTGGACATCAGCCTTCTCGCTATTCGAGGCTCTGGGCTGCTCATCTCCATCACTGAATTTCTAACACCTGGGTGATGTGCGGATGAGGGCCGTGAGGATGGCGTGACGCTGTGAACATAAAGCTCCCATCGTGTGACTGTGACTTAAATATCCTCCATGTCCAAACGGATCTTCACTTCTTGGTCTGCCCGTCACCAATGGGCTGGATCAGCATGGGCCCCTGCCTTTTCTGGCTTCAGGCTTGTTATCTGTGCCACGGGAGAGCCCTAGATCATTGGTGGCCCACCGATGGCCCTGGCCCCTTCCTCTTCTCTCACGAATGGTCAACATTGCCGTCTTATTGTTAAATGTGGAGGTATGATCCCTGCTCAGAACCCTTGACATCGCCGTGCTCTAGGCAGCCATCATGTGTTGATGGCATTCAGTGAACCACGTGCCGCCCCTCAACTGGTACTGTGAATGCACGTGACACCGACACCGTCACCTCGCAACAGGCGTGAAGTGTGTTGTTGACAGGTTTGGGGAGGAGGTCTTCTACCTCTGCTTCTGCAAAGCAGCTGAGTAAGGCTCTGCCTCCCATCCCCTGGCCACAGGTGGAGTGTGTGCTTGGCATGCACGAAGTTGTTTTTTAATCTTTTCTTAACTTGAAATTACATTTGCTTGTTCATTTAGCGTGTATGTGTGTATGCACGCGAGCAAGCCATGGTGCAAGAGTGAAGGTCAGGGGCTGGAGAGATGGCTCAGTGGTTAGGAGTACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAGCCACATGGTGTCTCACAACCATCTGTGATGGGTCTGATGCCCTCCTCTGGTGTGTCTGAAGACAGTGACAGTTACTCACATACATACAAAATAAAAGAGTGGAGGTCAGAAGACAATTTACCACAGTCAGTTTTCTCCTTCCCACCCCCGGGATCAGACTGTCAGGGTTGGAAGCAGAAGCCTTTGCTCACTGAGCCGTCTCACTGAGTTCTTGTTGAGGACAACTGAGTTGTGATAAACCAGTGTCTCAGAGAATGCTCCTGAGTTTTATTTCTTAATGGGATCTGTATATTGTGATCCTAGATATCCACCCATCCCCCCTCAGGAGTTGGGCTGTACCTCCCCTGAGGCGGCAGAGGCAGGCCCTGATGCCAGCCCCGTGTTTTCTTCAG
Seq C2 exon
ATGGGAGGTGTCAGACCCTAGCCCTTGCGTGTCATCTGCGTGTGAACCCGGTCTGGAGTCAGGGAGTGGGACATGTGTGCCCAGGGTGGGTGACTCAGAGAAGCCAGCGATGGCAGGCCCCTGCCGCCCGGATGACATGTCACCTGTGCCGGAGCCCTGCGTTAGGACCACATGTTCTCCAGGCTCGGGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=90.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTGACGACTTTGGCCCAT
R:
CATGTGGTCCTAACGCAGGG
Band lengths:
355-1674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]