GgaINT1005468 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6918605-6919119:+
Coord C1 exon
chr17:6918605-6918734
Coord A exon
chr17:6918735-6918929
Coord C2 exon
chr17:6918930-6919119
Length
195 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TACAATTACCTCCCATTTAGGTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
GTACACAACTTGTGAACTATGTGTGCTTTGATCAGATGAAGAATGAAATAACAGAAAATCAGCTGTGTCTGGGACTCCTACAACCCCTTCCAGGGTATGAACCCTGTGCCGTGGAACCATGCCCATACAG
Seq A exon
GTCAGTGTTCCTGGAAGCTAAGCTGAATTCTCACTATGCAGGGACTTAAATTTCCAGCAGCCATCCTCTGTCACATCCAGAATAGGCTCTTGAAATAGAGAAGCTGAATGCTCCCGTATCTGCAACAAATGTCATGAATAATAAACCTCTATGATTCAGATGAGAAATAAAGTGATACAATTACCTCCCATTTAG
Seq C2 exon
GTGGAAGATATCTCAGACAGATGAATGCTCTGCTGTTTGTGGAAGCGGCGTTGCCCAGCAGAATCTGACCTGTGTTCAGTTTCATAATGGATCGGAGACTGTTGTGGATGACAGCTTATGTTCTGCACGAGAAAAACCACTCTCCATTGTGCCGTGTGTAGTTAATGTCTGCCCTTTGGGATGGGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(72.7=90.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGTCTGGGACTCCTAC
R:
CCATCCCAAAGGGCAGACATT
Band lengths:
254-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]