BtaINT0014344 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104501057-104501755:+
Coord C1 exon
chr11:104501057-104501212
Coord A exon
chr11:104501213-104501584
Coord C2 exon
chr11:104501585-104501755
Length
372 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CCCCGGGTGTCCCCCTGCAGTGC
3' ss Score
8.47
Exon sequences
Seq C1 exon
TGCACGGCCAAGTGTGGGGAGCGAAGCGTGGTGACGCGGGACATCCGCTGCTCGGAGGACGAGAAGCTGTGTGACCCCAACACCAGGCCCGTGGGGGAGAAGGACTGCACAGGGCCCCCCTGCGACCGCCAGTGGACTGTCTCCGACTGGGGGCCG
Seq A exon
GTGAGGGCCGGGTGCTCAGGGGGCTGACCCGTGTGACTACGGGGGATCAGAACCTTGAACCAACACAAGCAGTCCCATTGCGATGCCCCCGTTATAAGCTCCCTGCCTGCCTCTCTCTCTTCTCCCACCTGGGTGAGATGCTCAGATGTCCACTGGGCTCCCCTCTGGGTGCTGGGTGCGCAGGGGACTCTTCTGGGGTTTTAGGTGTGTTTTTCATCGAGCCTGCCATCTTTCCGTAATTAGAACAGAGCGTGGTATTTAAAACAGTTACCGTGGCAACCCCCCCTCCCCTCCGCTGCTCTTCTCTCTGGGGAAGGAGGCCCGGGGGCCCTGGGAGGGGCTCTGCCTCTGACCCCGGGTGTCCCCCTGCAG
Seq C2 exon
TGCAGCGGCAGCTGTGGGCAGGGCCGCATGATCAGACACGTGTACTGCAAGACCAGCGATGGACGGGTCGTGCCCGAGTCTCAGTGCCAGATGGAGACCAAGCCCCTGGCCATCCACCCCTGTGGGGACAAGAACTGCCCCGCCCACTGGCTGGCCCAGGACTGGGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492:ENSBTAT00000009855:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(14.5=15.4)
A:
NA
C2:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(10.7=10.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCCAAGTGTGGGGA
R:
CAGTCCTGGGCCAGCCAG
Band lengths:
318-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development