RnoINT0013626 @ rn6
Intron Retention
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5649156-5650098:+
Coord C1 exon
chr3:5649156-5649311
Coord A exon
chr3:5649312-5649927
Coord C2 exon
chr3:5649928-5650098
Length
616 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CCTGCCACTCTGTCTTGCAGTGC
3' ss Score
9.11
Exon sequences
Seq C1 exon
TGCACAGCCAAGTGTGGGGAGCGCAGTGTAGTGACCAGAGACATCCGGTGTTCCGAGGACGAGAGACTGTGTGACCCCAACACCAGGCCTGTGGGAGAGAAGAACTGCACGGGACCTCCCTGTGATCGCCAGTGGACTGTCTCAGACTGGGGACCG
Seq A exon
GTGAGGGCAAGGATCAGGGTTTGGGGCAAGCTATTTCTGTAGTTAGAACAGACACGGGGTCCTGACCTGCAGACTCTGCTTTCCCTTCATTTTCTCATCTATCTGGAGTAAAGAGAGGAGAAGAAGAGAATTATAACCTTCCTTCCATTCCTTTAGGGGCTCAAACCCTTGTCCAGAAACAAGAGTGGGCATCACCACCCCAGTAATGGCCTTGCTGTCTCCGCCTCCCCTGACTCCATCCTTATCTCTGTACCTGTCTGTCTCTCTGCGTGCCTTTCCCTGTCCCTGTCTCTGACTCTCCGTGCCTGTTTTCCCTTCCTGTCTCTGTCTCCATCTGTCTCTCTCATCTGGAACAGAACTGCTCATATGCAAGGTAGGGGCAGCTCCGGTGGTGGGGCTTAGGTGACCTTTCGGGCTGTGCTTTTCTCCGTGTGTGCTTTGCAGCAAGCATGTTATTTCTGTAATTAGAACAGAAACGTTATTTTAAAAGTGGTTACCATGGGAACTGCTTCGCATCCTGCCCTGGAAGCTATTTGTTTTATTTGGGAGTGCTGCAGGTCGGGGGCTGTGGAATGGCCCCTGTTCTCCTACTAGCTCCTGCCACTCTGTCTTGCAG
Seq C2 exon
TGCAGTGGGAGCTGTGGACAGGGCCGCACAATCAGGCACGTGTACTGTAAGACCAGCGACGGACGGGTAGTCCCCGAGTCCCAGTGCCAGACAGAGACAAAGCCTCTGGCCATCCACCCCTGTGGGGACAAGAACTGCCCAGCACACTGGCTGGCTCAGGACTGGGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742:ENSRNOT00000036995:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(14.5=15.4)
A:
NA
C2:
PF0009014=TSP_1=PD(81.8=78.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGCCAAGTGTGGGG
R:
CCTTTCCCAGTCCTGAGCCAG
Band lengths:
326-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]