BtaINT0014387 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003604 | ADAMTSL4
Description
Bos taurus ADAMTS-like 4 (ADAMTSL4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101061]
Coordinates
chr3:20189730-20190616:-
Coord C1 exon
chr3:20190487-20190616
Coord A exon
chr3:20189935-20190486
Coord C2 exon
chr3:20189730-20189934
Length
552 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
TTTCCTGCCTCTGCCCACAGCTG
3' ss Score
12.1
Exon sequences
Seq C1 exon
GTGTTTGGCGCCCCATCTTCCTCTGCATTTCTCGAGAGTCAGGAGAGGAGCTGGATGAACGCAGCTGTGCCATGGGTGCCAGGCCCCCAGCCTCCCAGGAGCCCTGCCACGGCCCCCCGTGCCCACCATA
Seq A exon
GTGAGTGTGCCCCATGGGAGGGCTAGGATCCTAGGGACATAACAGTTGCCCCTGGGAGACCCATCCCTGCACCTGTAGGATCTCACTTGGACTCTGCACTCAATACAGGGTCTCCTGGCTACATTCTCTTAGTTTCTTATACAACCGAGGATGTGTGGTGTGTGTGTGTGTGTGTGTGTTAGTCGCTTAGTCCTGTCCAACTCTTTTTGACCCCATGGGCTGTAGCCAGTCAGTCCATGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCCATTCCCTTCTCCCAGAGGATCTTCCTGACCTGGGGATCTTCCCGACCTTGGGATCAAACCTTTGTCTCCTGCATTGCAGGAGATTCTTTACCATCTGAGCCACCACAAGACAACCCTGAGTCCCACAAGGGATCCCAGACTCCACATGTTAAATAAGCCCACTCGCCTCTGACAGGTCCCCACTCCCAGTTTGTTGTCCCCTTTCCCGAACATGGCAGCCGCACGTATCTCTGTTTTTGCCATCTCTGTCTCTGTCCCTTTCCTGCCTCTGCCCACAG
Seq C2 exon
CTGGGAGGCCGGCGAGTGGACGTCCTGCAGCCGTTCGTGTGGACCCGGCACCCAGCACCGTCAGCTACGCTGCCGGCAGGAGTTTGGGGGTGGCGGCTCCTCAGTGCCCCTAGAGCGCTGCGGGCACCTGCCCCGACCCAACATCACCCAGCCCTGCCAGCTGCGCCTCTGTGGCCATTGGGAGGTTCGCTCACCCTGGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003604:ENSBTAT00000004686:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=WD(100=81.2),PF0009014=TSP_1=PU(12.7=10.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGGCGCCCCATCTTC
R:
CTGACTCCAGGGTGAGCGAA
Band lengths:
334-886
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]