RnoINT0013670 @ rn6
Intron Retention
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197807063-197807661:-
Coord C1 exon
chr2:197807532-197807661
Coord A exon
chr2:197807268-197807531
Coord C2 exon
chr2:197807063-197807267
Length
264 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
TCCCTCCTCCTCACCCACAGCTG
3' ss Score
10.5
Exon sequences
Seq C1 exon
GTGTTTGGCGCCCCATCTTCCTCTGCGTTTCCCGTGAGTCAGGAGAAGAGTTGGATGAACAGAGCTGTGCCGTGGGGGCCAGACCCCCAGCTTCCCCTGAATCCTGCCATAGACCACCGTGTCCCCCATA
Seq A exon
GTGAGTACGGCCCACAGGGAGGGTTAAGATACTTAAAACACTGGTTCTGGACTTGCTTCCGGCCCTCGGGCTCTTACAGCACCTGGATGCAGGGAGAGATTAGATTAGAAAGTTTCATGTCCCACAGACTGTAAGGAAACCCTGGCAGCCTCTTCCCAGCTAGAACTGCAGATTCCAAGTGTGAGATATGACTCCCCTCCTGTGCGGTCCCAGTCTGTCAACCCCACCCATCTCCACCCAGCTTTCCCTCCTCCTCACCCACAG
Seq C2 exon
CTGGGAGGCTGGCGAGTGGACGTCCTGCAGCCGCTCCTGTGGCCCTGGCACCCAGCATCGCCAGCTGCTCTGCAGACAGGAATTCGGAGGCGGTGGCTCCTCAGTGCCTCCAGAGCGTTGCGGACATCTCCCCCGGCCCAACATCACCCAGTCCTGTCAGCTGCGCCTTTGTGGCCACTGGGAGATTAGCTCCCCCTGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385:ENSRNOT00000074156:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=WD(100=81.2),PF0009014=TSP_1=PU(12.7=10.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTCCTCTGCGTTTCCC
R:
AATCTCCCAGTGGCCACAAAG
Band lengths:
305-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]