BtaINT0014394 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003604 | ADAMTSL4
Description
Bos taurus ADAMTS-like 4 (ADAMTSL4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101061]
Coordinates
chr3:20193536-20194754:-
Coord C1 exon
chr3:20194399-20194754
Coord A exon
chr3:20194218-20194398
Coord C2 exon
chr3:20193536-20194217
Length
181 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CGTCTGCAACACCTTCTCAGGTC
3' ss Score
5.72
Exon sequences
Seq C1 exon
GTGTTGTCTGGACACTCTCTTCAGACACCCCCCGAAGAGAGCCAGGGCCCTGAAGGGGTCTGGGGTCCTTGGGACCAGTGGGCCTCTTGCTCCCAGCCCTGCGGGGTTGGGGTACAGCGCCGAAGCCGGACATGTCAGCTCCCTACAACTCAACTCCACCAGGGCCTGCCCCTTCCACCCCGGCCCCCAAGACATCCAGAAGCCCTGCTTCCCCGGGGTCAAGGCACCAGACCGCAGACTTCCCGAGAAACCCTTCCCCTATACAGGCCACCACCTCGAGGAAGAGGTGGCCCCCTTCGAGGTCCTGCTTCTCAATTAGGGAGAGAGGAGGCTCCGGAGACTCAAGGAGCTAGGAG
Seq A exon
GTGAGGGGTGGGGCTTTGAGGTAGGGGCGGTGCCTTGAGGTAGAGGCGGGGCTTGGGGTGAAGGAAAGGGTAGCAAAGGATCCAGGGCTTAGAAAGGCTTCTCTGGTGCTAGTAAGTAAGATGGGGAGGCCGGGTCAGAGATGGCCAGCGCTGTGACTCCACGTCTGCAACACCTTCTCAG
Seq C2 exon
GTCCCGGGTTCGAGACCCCATCAAGCCAGGAATGTTTGGCTATGGGAGGGTGCCCTTTGCTTTGCCGCTCCATCGGAACCGCAGGCATCCCCGAAGACCACCCAGATCTGAACTCTCTCAAACCTCAGATCTTCCATCCCTGACTCCGAGAACAGAGCCATCTTCCTCAAACCACACCCAGAAAACAGAACTGTCTCCCACAGAACCTTCTGCCCACACCCTCCCACCCCAAGCAGAACCCCCAAGCCCTGAAGCTGCTCAGACAGCCGTGCCCTCTAGAGCCAGGCCTGCCCCCACAGGGCCACACCCCAGAGCCCAGGCCTCTGGCACAGAGTCCTCCTTTCATTCCCCATCCCCGGGAGAAGGTAGCTCCTTTCACCTGTCCCTTCAGCCAAGAAGGCCAAGTTCCCAGGGTTGGGCCAGCCCCAGGCTGGCAGACAGACACCCTAATCCTTTCCTTTCTGTGCCTTGGGGCCGAGGCCAGCAGAGCCAGGAGCAGTGGAGACCTGGGGGGAATCTCCACGGGTCCCTCACGGAGTCTGCCCCTCCCCAGCCAGATGGCTGGCTGCCTCTGCTGAGCTCTGGCCCCCACTCCAGCCCACTCTGGAGCCTCTTTGCTCCCAGTAGCCCTGTCCCAAGATGTTCTGGGGAGAGTGAACAGCTGAGAGCCTGCAGCCAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003604:ENSBTAT00000004686:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.868
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=31.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCTATACAGGCCACCA
R:
GTTCTCGGAGTCAGGGATGGA
Band lengths:
257-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]