RnoINT0013678 @ rn6
Intron Retention
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197810504-197811572:-
Coord C1 exon
chr2:197811235-197811572
Coord A exon
chr2:197811102-197811234
Coord C2 exon
chr2:197810504-197811101
Length
133 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AAGTCTACACATCCTCCCAGGTT
3' ss Score
3.24
Exon sequences
Seq C1 exon
CTGTTGGGTCCTTCTCTTCAGACACCATCAGAGGAGGACCAGGTCCCTGAGGGTCTCTGGGGACCTTGGGGCCGATGGGCCTCCTGCTCCCAGCCCTGTGGGGTGGGGGTGCAGCGCCGGAGCCGAACATGTGAACTGCACCCAGCCCTGTCCCTCCCTCCCCGACCCCCAAGACATCCAGAAGCCCCCCAGCCCCGGGGCCAGGGTTCCAGACCCCAGACTCCACGGGATCCCCAGTCCCTGTATAGGCCACAGCCTCGGGGAAGGGGTGGCCCTCTTCGAGGTCCTGCTTCTCAAGTGGGGAGAGAGGAGACCCAGGAGCCTCGGGGGGCCCAGAG
Seq A exon
GTGAGGCTCTGAGGGCAGAGCAGAATGGGGGTTAACAGAAAGGTGTAGGGGACTCCAGCGCTGCAGGCCAGTCTTTCAGGAAGCAGACCGGGGAAACAGGCGAAGAGGTGACTAAGTCTACACATCCTCCCAG
Seq C2 exon
GTTCCGTGTTCGAGACCCTATCAAGCCAGGGATGTTCGGTTACGGGCGAGTGCCCTTTGCTTTGCCCCTGCACCGGAGCCGCAGGCTTGCTCACAAACCTGGACAGCCCAAGGACTCCTCTACAGCGGAAGAGACACTTCCATCCCAGCCTCCAAGCACAGAACCAGCCTCTGAAAAGCACAGCCCCCACATGCAGCCCCCTGAACTGCGTGCCCAATCCCGTTCCCCCTCAGCTGAAACTCCAAGGTCTGGAACTGCTCAGACAGAAGTGCCCTCCAGAACCAGTTCTGCTCCCTCCGACATGGGTATCCCTGCACCCACTTCCTCCTTTAGAGACAGTAGGTCTTTCCAGGGATCCCCTGAGCCACGAATGCCAACTTCCCAGGGAGCAGAGCGACAGCCACATCCTTTCTCTCCTGTCACCCGGAGCCAGCTGAGCCGGAGGCACTGGAGACCTCCGGGGAGTCCTCACAGGTCCCCAGATGGCTGGCTGCCTCTGACAAGGGACTCCAGCCCACACTGGAGCCTCTTTGCTCCCAGTAGCCCCACTCCAGAATGTTCTGGGGAAAGTGAACAGATGAGAGCCTGCAGCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385:ENSRNOT00000074156:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=28.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGGTCCTGCTTCTCAAGT
R:
CTGTGCTTTTCAGAGGCTGGT
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]