BtaINT0015851 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004442 | AGPAT1
Description
Bos taurus 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) (AGPAT1), mRNA. [Source:RefSeq mRNA;Acc:NM_177518]
Coordinates
chr23:27017065-27021562:+
Coord C1 exon
chr23:27017065-27017362
Coord A exon
chr23:27017363-27021353
Coord C2 exon
chr23:27021354-27021562
Length
3991 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
CTTCGCCCCGCCCCCTGCAGGTG
3' ss Score
11.75
Exon sequences
Seq C1 exon
GCGGGCGTGGGGAGGGGTGGCGGGGGATAGCGGCAGCAGCAGCAGCCCCAGCCCTCAGAGAGACAGCAGGAAGGGAGGGAGGGAGCTAAGGGGACAACCCCCCACCATTCCTACCGCTATGGGCCCAGCCTCCCACTCTCACCTCCCCTCCTTCGGCCGGGGCTAGGACACCCCCAAATCCTGTCGCCCCCTTGGCACCGACACCCCGACTGAGGCAGAGACACAGCCACCCGCCACCACCGCTGCGGCAGCCTGGCTGGGGAGGGGGCCAGCCCCCCAGGCCCCCCACCCCACTGAG
Seq A exon
GTGGGGGCAGGAAAGGGATGGGAGGAGGAGGGAGGAGGGGATGGGGGAGAGATTGGGTCTGGGAGGGCGGGCTTGGGGAGAGGATTGATGGGAAAAGGATAAGGGCCGACTGGGGAGAGGGTTGCTGGGGAAAGGAGAGGGGGCCTGAGAGGGGGGAAGGATGGAAGAGACACAAGAGGGAGGAGAGATGGACACCCTGTGAATTTGAGATGGGGGTGTGGACAGGGGGATCTTGGAGAGGAAATTCCCATCACCTTCCCAGTTCCTTTTTGTGCCCTTTGGCCCCACATAACTCTTGCGGGGTTGTGGCAGTCAGAAGGCAGTTTACTGCCCTCGATTCCCCAGCAGAATTGGCTTCCTAGGAATGCCCTCAGACACCTCTGTTTCTGTGTAGGCACAGGACCTCTTGTTTCTCAGTGGCCTTCGGTACTGTGTTCGACCCTTACTGACATACAGATGCCTCGTGGGGGGCCATGTTTTCTACACCGAGTGGGTGTGCCTTTGACATGTTTAATGGCTTCTATGCCAGTAGTGTGCCCAGTGCTGTCCACAGGCTGGAGAAACAGTGTGTTATTTTCCATCAGAATTGCCTGTTCTCATATCTATGTCCATGTCTCATGCAGTCTTAACGTGTTCACGTCTGCTTGTTCTCATCTGTTGCCTCTGTTGTGTGGTTTTGTGTTTCTTGTCCATGTTATGTATTTGCACGTTTACTTTAGCATGTAGAGATCATACCTTACTTTGTTCAGGCCCACAGGTGCTGTGTTTAGTCCCACCATATGCAGGCGCCTTCGTGTGTGGAATCTCATGGCTTAACTGACTAGCGCACACTCGGTTGTGATTGGATTGGCCTGTTGACTGTCTGTGTTTTCTTAATCCTGGTTCACACCACCCACATGCGTGCCCCTTCGCATGATGTGCTGATGTGACATGTCCACAACTCGTGTGCTTCTGGTTAGACATGTATTTCATAATTTGAGGGGCAGTATATTTTGTGAGCCATATGCTCATTAACTCCCTTGGCACTCCATTGTGCTTATGAATCCTTGGACATTTCCTGTTCTGCAGAGGAAAGGAACATCACATATTAGAGAAGAAGATAACTGGGCCTCCATGTTGCTGAAGAGCCACTTCCATATACCTTCCCTTGCTGACCCCCTGGCCTGCATCTCTTCATGCACATTATCTCTGGCGCCTGTGCACAGTCTGTGTCCATGGAGCTCAGTGCCCAGCACAGGGTCAGCCCTGCCAAGCACATGAGCTGTCTGTCCCCCGCTCTTTGCACTGTTGGCACGCATTTGATGACACCAGCATCTTTCCCCTGTGGCATGTTAATCCCCATTCTGTATGTTTCTCTTGTGCGAGACGGTGTGTTCCATCTTGTCTCAACTGTTGTTCTGCCATCACTGTGACCCTCTTGTGTGTGTGCATCCAGAGTAGGTTACTGTTAGGCCTGTGTGTTCATTGCCTTCTTGGTGCCTTTTCTTTTCCTAGTTAATAGTCCTCAAGAGGGTAGCTATCTGATTCATGTTCAGAAGTGTTGTCCCGTTAATTACAACTAGGTGGGTATGTACACATCCTTATAATCTGTCCAGTAAATATTTATTGAGCATCTTCTCTGCTTCATTCTGTCCTGGGCATTGGGAATAAGACAGTTCCTGCCATCAGGCTTGCCTGCAGGCTAGGAAGGTAAACACAGGTGACCTCAAGCAACTACATGCTGTTTAGTGTTGAGGTCAGTGGTCCTCAGACTTACATGCACATTGGATTCACCTAGATGGCTTGTTAAAACACTGGTTGATGGGCCCAGTGCCCAAAAGTCTTGTTTCAGAAGATCTGGGGTGAGGGCCAAGGATTTGTGTTTCTACACTTTGAGGACCAGTGATCAAGATAAAGTGTAATGAAAACACAAGCCTGGAGGAGTTCAGGAAGAACTCCAAAAAGTGACACCAAACTGGATGAGGCAAGTGAAGAGGTGGAGGAACATCCCCACCGAAGGGAACATCCTGTTGTGACCTAGAAGCATGAAAGATCATGGTGTGTCTGAGGAACTGCAGTTAATCGGTGTGCTGGAGTGAAAAAGACTCTTGTAGGGATGTGGCCAAAGATGTAAGCAGAAGTCAGCCTGTCCAGAAGGGCCTCTGGGCAAGAGATATGCTCAGATTGGTGTCGCGGAAACATCCTGTGGTTGCCGTGTGGAAGATGGATCGAAGGGGATGAGTTAGGAGCCTGTTGCACGTAGTGCAGGGGAGACACGCTGGTTCCAGCTTGCGGGGAAAGTAAAATGAAGCCACACAGAGCCCGCTCTCCTAGTGCTGGCACAGTCCTGTTTCCCCTATCACCTGTCACCTTCACCCTTGGCAGTGGACTGACCTTGGAGCACAGTCCTTCTGTCGTGGAAGGGAGTGCCTTTGGCCTTGATATGAGTGATAGATGTTTACCTGAATGCCGTTTTTGTGAATTGTGACCCTGCCCCCAACAGTGGGTCGGAGTGGAGGAAGGAGGAAGAGCCTGGAGAAGCGATTCTGCATGCCACGCTTCCTCCTCCAGAGCTCCTTCCTCTCCCAGGCAGGTGGTACGATGACCCTTTTACTCTTTCGCCCTCCTCCTCCCGCTTGGTGAGGACTTGCATACTGCCTGCCGGACCACTCTGCCTCCAGTGTCGCTGGAAGCGAGGGGAGGGCTGGTGGGATCTGTTTGCCTGTCTGTGGAGGCAGGATTAATGGACATAGGTATGTCCATGGGTTGATCTGGGAGCAGGGAGCCTGCCTGGGTGGAGAGGGGTTTTACTGGGTATTCATTTTGCCGTCCTTTTATCTGTCATGATTATAAATTTGCATGTGTGCACGAACATGTTGGTCTTTGTATAACTGTGTGTGTCTGGGTTTGCATTAGTGACAGAGCCTTTATTCTTGGCAGTCAGCCCTTGAGAATGTCTGTGTTTTGTCACGTACATGGTATCTACTATGTGCTGTGTGTACACATGTGTACAGATATTTATACAGACAACAGCATAACCAAGTGGTTAGGAGCACAAGCTGCTTAGGTTTAAGCTAGGAAGTACCCCTTGGGGGTCATATCACCTCAAATAAGTTTTTTAACCTTTCTAGGTCTATTTCCTTTCATATGTAAATTGTGTGCTTTCATATTTAAGGACTTAACATAGTATATGGGCTTGAACCCACCTGCCAGTTCAGGAGACATAAGAGACTTAGGTTTGATCCCTGTGTTGGGAAGATCCCCTGGAGCAGGGCATGGCAACCCACTCCAGTATTCTTGCTTGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTCCATAGGGTCACAAAGAGTCAGAGACAACTGAAGCAACTTAGCAGCAATGGCAACGTAGTATATAGACCAGCCTTGTACAACAGAACTATAATGTAAGCCACGTATATAATTTTTAATTCTCAGCTACATAAAAAAGCAGGATGAAATTAACCTTAGTATATTGAACCCAGAATGTCCAAAAAGTTATAATTTTAGAATGTAATCAATATAAAAGATTATTAATGGGATATTTTGCATTGTGTTTTTATTCAACATCTATGAAATCTGACATGTATTTGATACCTCTCAGTGTCTCTCGGTGTAGAATAGGGCACATTTCAAGTGCTCAGTAGCCATATGTGGCTGGTGGCTACCATATTGAGCAGAGAGAAAGACCATTATAAGAGCCTTACTGGCTGCAAGTGTTAGCTATTATTAATGTCCCTTTATTGCCGTGTATCTGTGAGCTGTGGATGTCCATGTCGTGTGTCTTTTGTGTGAATATATCTGGCACCTTCAGGGACGGGTGGGAGAGCAGCCCTGAGCTCCCATCCCCATCACTCCCCTCCTAAAGAGGCTTCCTGGACAGGTGTTAATGCTCCCCACAGCCCCCCAAACCTTCCCCCCCCTTGCCACCCCGCCCCCCCACCTAGGAACCAGGCCCACCGCCCTTCGCCCCGCCCCCTGCAG
Seq C2 exon
GTGACCAGAATGGAGCTGTGGCCAGGGGCGGGGACTCTGCTGCTGCTGCTCTTCCTGCTGCTGCTCCTCCTGCTGCCCACTCTGTGGTTCTGCAGCCCCAGTGCCAAGTACTTCTTCAAGATGGCCTTCTACAACGGCTGGATCCTCTTCCTGGCTGTGCTCGCCATCCCTGTGTGTGCCGTGCGAGGACGCAACGTCGAGAACATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004442:ENSBTAT00000005821:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]