RnoINT0015233 @ rn6
Intron Retention
Gene
ENSRNOG00000000437 | Agpat1
Description
1-acylglycerol-3-phosphate O-acyltransferase 1 [Source:RGD Symbol;Acc:1303287]
Coordinates
chr20:4371023-4375440:+
Coord C1 exon
chr20:4371023-4371220
Coord A exon
chr20:4371221-4375240
Coord C2 exon
chr20:4375241-4375440
Length
4020 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
3' ss Seq
CTGGCTCTTCCCGTCCACAGGTG
3' ss Score
12.43
Exon sequences
Seq C1 exon
CGGCCCCCCACCATTCCTACCGGTATGGGCCCAGCTTCCCACTCCCACCACCCCTCCATCGGCCGGGGCTAGGACATCCCCAAATCCTGTCGCCCCCTTGGCACCGACACCGAGACAGAGATACAGCCAGCCGCCACCACCGCTGCCGCAGCCTGGCTGGGGAAGGGGCCCGTCCCCCAGGCTCCCCGCCCCATTGAG
Seq A exon
GTGTGGGCGGGAAGGGGGTGGGAGGCTGTGGGAGGAGGGGGCTGGAGAGGGACGGGGCTGGGAGGGCCGGCTGGGGACGGGGTTGCTGGGGAGAGGGGCCTGAGCGGAAGAATGGGAGCGACGGGGGCTGGGGACTGGCTCCGAGGTGGAGGGCTCGTTCTGAGTGCAAGAGGCGATGAGAGGAGGGATGGTAACTCCGAATTTGGGACGGGGTGGGGGGTGTGGATCTTGAAGAGGGGATTCCCTTCAGGTTTCCCAGTCCTTCTGCTGCGTTTTGGCCCCACATGACTTCTGGGTGGAGGTGAGGAGCCAGGTCTGCTTCCGAGGAATGCTATCAGGCACCGTTAACCTCTAGGCACAGAAGCACTTATTTCGAACAGGCCTTCCAAACTGAGACCCTTAACTAACACTCGGTGTCCTGTGGGAGGCCCCGAGTGCCTTGGATAGGTCGAGTAGCTTATGTGCAGCCCTGTGCTCTCCTCACAGGCTGTAGGGAATGACGTTTAAACTCCCATCAGAACGGCTCTCCTATTTTACACCCATGCCTCAAGTTCAGTTTGTGACATGCTCCAGTGTCAAATTTATGCGAGGACTTGGCATGTTTCACCTGTTGGGCGTTTTCTGCGTTGCCTCGATGCTCTTGTCTCCCCTGTTTGACTTAGCTCAGCCCCTCCGCCTCACAGGTGTCCAGAGCTGCACTGATTCAGTGGCTTCAGCCCTGTTGTGACCACAGGAGCCTGTTTTATTGGAGGACTTGGTTCTCACCACAAATCTGCATGCCCGTGGTGTGACATGTTGATGTACTAGTTTTACCTGCCATTTATTTCCTAAATTCGTTGTGATTGATTGCTCATTAACCCGTTTGGCATCCCAACATGTTTATGAATCTTCAAACATTTCTGTCTAAAGATGATCCCTTCATCAGGCCAAGTGTTACACAAGTATTACTTTTAATTCCGCCAAGTTTTGTTGTTTTGTTTTGAGACAGGGTCTCTATGTAGTCCTGGCTAACCTCAGGCTCACCTGTCTCTGCCTTCCAAGTGCTGGGATGAAAAGCATATGCCACCATGCCCGGACTAAGAATTCTCTTTTCCTTCTTTCTTTTTTATCACCTCCGGCCCCACCCACCCCCTTGGCAGTTTCACATACCCTACGCTGGCCTTGAGTTTGACATTTAGCCAAGGCTAGCCTGGTATTCCTTACATGTTTGTGTCACAACACCCATATCCCAAAGGACCGTTCTCCCTTTGCTTTACTGACCACCCAGCCTGTCTCTTCACATCTGTTTCTCCATGGGCTGGGTTTATAGTCTGTGTCACAGCTTAATCCATGTCTATCCGTGGGGAGCCCCCAGTTGTGTTCATGGATGAACCACTGTTTGTGCCCCACTCTTGGCAGGGTTGGCACGTTTGGTGACAGGAGTGTGGTGACATGTTGGTCCCGTTGTGCATACTGTCTGAGACAGCATCTTCCTGATGTAACTTCTGTCCCTGAGGCTTCCCTCTGGCCGTGCGCGTTTAGAATGGGTTGTTCTGAATGAAGCTTGTTGTCAGTGTTTTGGGGGGGGGGGGGGATGCCCTTTCCTGATTAACACACCTGAAAAGGTATCGATCTGTGCTGATCAGAGCTGCCCAGCACAATGTCTCTGCACTGCAGAAGCAAAAACGAGAGGAAACAGAAGGGAACCATGCTGCCTAGCATTTGCCGGACAGTGAGGTCGTGTCCATGGCCACATAATCCATTCACCAAGACTCGCTGAGCACCATTTGTTCCCACAGCATTGAGAATAAGACACAATCCTGGCCTGAAGTCTTTACAGTTTGGAGGAAGCTGGGCAGGAAAAAGAGCAGTGAACATTTTACCTAAAGCACTTACCATCAGGAGGTGTCAAGGCAGGCAGTGTAAGACTTACCTGGAAGGCACATTAACATACAGATTGGCCTGGTGCCGTGATTGGCTCATTATGTGTGTGGGTGAGGCACGAGAGTTTACATTTCTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGAGAGTTTACATTTCTACACCTTGACAACCACTGCTCTTTGCCGGTGAGGTGGCACACACCTTTGGTCCCTGCACTTAGGAGGTACAGGCAGGAGCATGACCAGTCTAGGGATATGGAGGGACAATAGAGAAAAGTTGTAATGAAAACATGGGCCTGTCCAGGTTCCAGAGACATTGAAAAGTGGCGCTGGGTTTGTGAAGCCTGAGGAGGCAGGGCCTGCCAGCCAGAGGGAACAGAAGCATGAAGGTCTTGTGGCAAATTTGGGGACATGAAATCAATCATTTTTGAAGATGGGGTCAGAGAAGTACAAGTCAGCTTTTCAAGAAAGGCCTTTGGAGAGGCAGATACTCAAGATGAGGTGACAGCATCTCTGGCAGCCATGTGTGAATGGGGTGGAGGGCACAGTGACCGAAGGGTACAGCGTACACAGCACAGGGAGGGAGAGGCTGGGCAGAGCAGTCAGAAAGCCCACTGTTGAGTTCTGGGAGGGCAGGGGTGGGGCAGACTCTGAAAAGAAGGAAGAGCTTTTAGCCTGCGTGGAGAGACAGGCTAAGCCCCTTCTTGTCACCTCCGAGGGGCAGAGTGCAGTAAAGAGGAAAGGCCCAGGAGGCAGGCGGCGCACACTGCCCTCTTCCTTCCCGTCTTGGCAGGGGATTAAAAGTTCCTTTGACTCTGGCCTGTTTCCTTGGCATGGCCTCTCACACAGCTGTCCTCCCTCCATGAGGGTAGAAGGAGAGACAGGAAAGTTGGGTTTGTTTGCCCATCTGGAAGCACACTTGGTATGTTAGGTGTAGGGCACAGAGGTCTCCGCCTGGGGAGAAGAGAATTTTCTAGACGTGAATTTACTGTATCCATCCCCAGGTTTGACGGTAAATGTGTGCTTGTGTGTGACTATCAGCCTTTGTGTGCCGAGACTTTCTGCGCCACGAGCCTTCATTCTTGTCACTTGTGCCATAGCGTTTTTGGGGCACTGTTTCCACGTCTGGCATGCGCATGCACATGTGCACACGCGTGCATGTGTAGCGACAGTGTAGTAGAGTTCAGAAGCACAGGACGATTCGGGTTAACCTGGAAGCTGCTGTGTGGGAGCCAGGTGGCCTCAGGTAAGGCCCTTTCCTGGAGTCGTTTCCTGTGAAACCGATAATGTAAACTGAACTGCTGTGTGGACCACGTACAGAGTTTAACATGGCACTTAGACCAGCGCTGTCCACCAGGCATGAAATAGGGCTGCCCTTTAGTTTTAAATTTCTGATAACCACAGTATAAAAGGCAAAGAGAAGCAGGTCTGTTTTGTTGGTATTTTTGACCGAAGCCAGTAGATCCAGAAGGAATCGGTAAAAGATTAGGTCAGGTGGTGGAACTCTTACCTTGCATGCGCAGCAGGGCCCCCCTCCCCCCTCGCACTGGGAGGTGGGGCGAGCACTAATGGGATGGTTTACACGGCCGTTTTTTACCCAGAATCCTCAAGTCTGGTGTGCATTTAACAATCTCAGCTCCCTCTCCATTGGAAGTGGACGGTACACGTGTTGTAGACTACCTGCCCAGAGCAGGTCTTGGTGCCCTGTGCTGGCTGTCACCTTGGCATGTAGGAGACAGGAGTGTCGGTCACTATGAGTTAGTTAGAGGCCAGCCTGGACTGCAGAGTTCCAGGTCAGCTTGAATTGGAATGAAACTCTGCCTCAAAAACCATAGTGTCTTCCAGCCACCGCGTGTGCCCCCAGTGTTGCGTGCTGCTGTCCCGCTTTCCTTGCCTGGGAGCACAGGTGTTTGGGGCTCTTGTCTGTCTACATCTAGAGACCCGGAGCAGCAGAGAAGAGCTGTCTGACTGAGTTCCTCCCCACTCTGGACCCTTGGAACCTCGTTCAGCTCTGCCCACCGTGCCTGGTTAACCTGGCTCTTCCCGTCCACAG
Seq C2 exon
GTGACCAGAATGGAGCTGTGGCCCGGGGCCTGGACGGCGCTGCTGCTGCTGCTCCTCCTCCTGCTGTCCACCCTGTGGTTCTGCAGCTCCAGTGCCAAGTATTTCTTCAAGATGGCCTTCTACAATGGTTGGATCCTCTTCCTGGCAATACTCGCGATCCCTGTGTGCGCCGTTCGAGGACGCAATGTCGAGAACATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000437:ENSRNOT00000000500:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]