HsaINT1003184 @ hg38
Intron Retention
Gene
ENSG00000204310 | AGPAT1
Description
1-acylglycerol-3-phosphate O-acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:324]
Coordinates
chr6:32171297-32178096:-
Coord C1 exon
chr6:32178001-32178096
Coord A exon
chr6:32171506-32178000
Coord C2 exon
chr6:32171297-32171505
Length
6495 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
3' ss Seq
CCTTGCCCCATCCCCTGCAGGTG
3' ss Score
11.45
Exon sequences
Seq C1 exon
TCCTCTTTTAGAGAATGTCCGGATTGCTATTGGACTTTGGAGCGTATGGCTCCAAATCAACTCATTGGCTAAAACTTGACGGAAAATGGTGGTTAG
Seq A exon
GTAAAACGCGCCTGCGCAGCACGCGGCGGGACGGGGGTGGGCCAATCCTGTGAGGGTTTAACCTTCTCTTTTTCCACCTCTTCACCCCTATCTTGTCGCCATGGTGACTGCTCTACAATTGGCGAGGCTTGCACTTCAAAGTCCTAGGCTCGCTTCATCCGGGTCCTTCAGCTGTGGACTTTCTGCTGATTGGGCCTTTTCCTTTTCCCCTGATTGGCCGACATCGGGAAAGACGGCGAAGAGCTAGGAAAAGAGGGAAAACACTAGGGTCGCAGGGTTCAAAATGGCTCCAACCTCCTTTGGTGACGTAGAGAGCAGAACTTGGGTCTGCCCCTCCCTTTTAGTTAAGGGAGCAGAACTGGGATTAGCCCGACGTTTGGATAGTGGGAACATCGATCTGCGGCGCTGGTGTTAACCCAACTCATTCGGCTGGACGACTCAGCCCTCCCCATATTAGGTGATTTACAGAGCAAAACTGAACTAAAGGCCCACCCCTTTCTTAATGTTGTACACAGAGTAGAACAGGATTGACTTCAACTCCGTTTTAAACCTTCAGAGCAGGAAAGCTCTGGGCTCAACCCCTTTGTGAGTGGTGCAAAAGGGACAAAGCCCGCCCCTTTTAAGGAGACCCGCGGAGGCTAGACCCGCCCTTTCCTCTTTATAATTTGCCCATCAGAAATAGGGTCTTCTTCCCAGGTTGGACCCCGGGGAGTTTGGGCTTTTCCTACAATCACTGACCCTCACTGTGACTAAAGGAGCAGAATTAGGTAACAGTCCTCCCACTACCAATCCTCTTCCCGAGGGCATGTAAACTAATGCAGGGTAAAGGTGTGGCTAGAGGGGGGACCTTGATAAAAGATCCCATGTGACTCAAGAGTAAGGAAAGATGAGAAGTTAGCAGTTGCGTAAAGAAGGACTGGGGCAGATGAGGATTCAGGAAGCTTGAGGTTTAGGAAGGAAGATATTGAGAGGGAAAGGTGGAAATGAAGGAGAGTGAAGTGATGGAATGATCCTAGTAAAGGGATAATGGGAGTGGAGGAAGAGAAGAGGGGGTGGAAAACTAGATACATGGCTACCAAATTAAGGAGGCACGCGCATTCCAGAGGAATCGGCATTCTTCCTCACTTTTTATTTTTCTAGAAAGCACCCCTGAAGCCAAATTTCCATTGGAAGAAAAGATGTACCCATATTGTATGTTGTGAGAAGGGGTTGTCTCAGCTTGGGCAAGTAAGGAGACTGATACGAAGGAAGTAGGAAAGAAAAGGTACAGAGGTAAAAGAGCATGGAAAAGGAAAGGGTCAGGGATAAGGCCAAAGAGATCTCTTCTCTTTAAAGGCCAGAGAAGGCAGGTGGAGGGGGGAGCTGGACTGCTGGGAGATAGTGAGGGACAAAGGGCAAAGGAAACCAGACCAGAGGACTGGAGAGTGAGATGGAGTGAGATGGAGTCCTGGAGAGAAAAAGAAGAGAGGTGAACTTAATGCTTGTCATATGGTAGGTAGATGCTTGATAAATGTTTAGAATTGAATGGGTACGGGAAAAGGGGTCCTTAAGAATAGTTGGGGGGAATAAGCAGCAGATAACCGGAGTTGAGAAAAAAAGAGACCAAGTAAAAGTGGCAGTTAAAAGAGAGCTGATGGAGAATAAAGGAAGGAATGTGCGGAAGGAGGAATACAGCACCAGGGGATCCAGAGCTGAAAGGGAGTTAGAGAAAAAAAAGATGCAGCTGGAGCCAGAGATGGGGGCAAAGACCGAGGGAGAGCCCTGGGGCGGGGCTCGCAAGAGGACACTGGTAGATGTGGGGAGGAGATGCCAGAGTTTCTGGGAGACGATTGGCAAAACAGGCTGCCCATCACCGCCCTCCACTTCCTGGCCGGCCCCGGAAACCAGCAGGCGTTGGGGAGGGGTGGCGGGGGAATAGCGGCGGCAGCAGCCCCAGCCCTCAGAGAGACAGCAGAAAGGGAGGGAGGGAGGGTGCTGGGGGGACAGCCCCCCACCATTCCTACCGCTATGGGCCCAACCTCCCACTCCCACCTCCCCTCCATCGGCCGGGGCTAGGACACCCCCAAATCCCGTCGCCCCCTTGGCACCGACACCCCGACAGAGACAGAGACACAGCCATCCGCCACCACCGCTGCCGCAGCCTGGCTGGGGAGGGGGCCAGCCCCCCAGGCCCCCTACCCCTCTGAGGTGTGGGCGGGAAAGGGATGGGAGGAGGAGGGAAGAGGGTGCTGAAAGCGACTAGGATGAGGGGAAGGGGAGAGATTGGGTCTGGGAGGGCCGACTGGGGGAGAGGGTTGCTGGGGAAAGGAGAGGGGCCGACTGGGAAGAGGGTTGCTGGGGATAGGAGAGGGGACCTGAGAGGGAGGAAGGATGGAAGAGACCTGGGAGGGAGGAGAAATGGAAACCCTTGTGAATTTGGGACTGGGAGCGTGCACAGGGAATCCTGGAGAGGGAATTCCCTACACCTTCCCCAATTCCTTTTCTTGCCCTTTGACCCCACATGACTCTTGAAGGGTCATGAGGGGAGAAGGCCAGCAGAATTTGCCTCTTAGGAATACCCTTAGGTGCCTCTGTTTCCATCTAGGCACAGGACCTCTTGTTTCTCAGTGGCCTTCCACACTGCTAGACCCTTACTGACACACAAATGCCTTATGGGAGCCATGTTTTCTACATTGAGTCTGTGTGCCTTTGACATGTTTAATGGCTTGTGTGCAACTAGGTTGTCCCAATGCTATCCATAGGCTGTGTAGAAATGGTGTGTTATTTTCTATCAGAATTGCCCATTCTTCATTCTTGTGTCCATGTCTCACATCCAGTTTTGACATGTTTTAAGTACCGCATGTGTGTGAGTTTTCATATATTGCACCTGTTCTATAATTTCATGTTACTTGCACATTTTATGTTTTGGCATGTTTATTTCAGCATGTGAAGGTTATATACCTTATTTTGCTTTGGCTGACATGTCCATGGTCCTACCATTTGCAGTAGTCTTCATGTGTGGGATCCCATGGCTTGGCTGAATACCCCACACTCTGATGTCTGACTGAATTGGCCTGTTTGCTGTGTTTTCCCAGTCACAGTTCACAGAACACATGTGTATGCGCCTTTGCATGATACACTGATGTAACAGGACCATAGAATGTGTGTTATAAATTTGTCATCAGTATATTTTGTGAGCCGTATGCTCATTAAATTTGGCCCTCCATTGCATTTCTAAATCCTTGGACTTTTGTTCTCCAAAGAGGGTCACTTAATATCAAGTGTTAAGAGAAGAAGGTAACTGGGTCTCCAGGTCTGCAAAGAACCATCCCTGCATGCCTTACCTTGGTGACCTCCCTGGCCCATACCTCTCTACACAAACATTATCTTTCCAGTGGCTGTGTACAGTCTGTGTCCATGAGCTCAATGCATGTCACAGGGTCAATCCTGCTGTGAACCCCATTGTTGGTATTTATTTATGGACATTATCCTCCATTCTTTGCACTGTTGGCACACATTTGATGAGAGCAGCATCTTTCCCTGTGGCATCTTGATCCCATTCGGTACATTTCTCTTGTGAGATGACCTCTTCCTGATTATTGTTACTCTGCCTTCATTATGGCTATGTATTGCATGTATCTATTCAGAGTCGGTTACCATTAGGCTTGGTGTGTTCGTTACTTTCTCAGTGACTTCTTTTAGTAGTCACTTCTACTCAAGAGGATAACTATCTAATTTGTGATCAGAACCGCCATCTCTGTCATTAACTGTGGCTCTATGGGTGGGTATACAGCCTTAGAATCTGTTCAGCAAGTGTTTATTGAGCACCTACTCCATCTCCTATTGTCCTGGCACTGGAGATAAGACAGAGTCCCTGTCCTTAAGCTGCTTACAGCCTAAGGAGGGAAACAAAAACGCCAGTCAACACATAGTGTGTTGTCAAGATCAGTGGTTCTTAAATTCAGGCGCACATCAGACTCACCAGAGGGCTTGTTGAAATACAGATTGCTAGCCAGCCACGATGGCTCACACCTGTAATCCCAACAGTTTGGAAGGCTGAGGCAGGAGGATCGCGTGAGTCCAGGAGTTCAAAACCAGCCTGAGTGACAGAGTGAGAAAAAGAAAAACAGATTGCTGGACCTAATGCCCAGAATTTCTGATTCAGTAGATCTGGGGTGAAGTCTAATAATTTGCATTTCTATACTTCGAGACCCGCTGATCAAGATAAAAGTGTAAGGAAAGCACAGGCCTGGAGGGGTTCAGGCAGCCCTCCAAAAGGTGACACTGAGCTGTGTGAGGCAGGAGAAGAGACAGGCATTCCAGCCAAAGGGAACAGCATGTTCAAGGTGGGGAAGCATGAAAGATCATGGTGTCTGAGGAACTGAAGTGAATCAGTTTGACTGGAACAAAGAGTTTTGTGAGGATGTGGTCGAAGATGTAAGCAGAAGTCAACTTATCAAGAAGAGCCTTTAGGCAAGACAGGGAAATGCTCTGTGTTTCAGAAAAATCTGTGCTAACAGAAAAATCTCTGTGGTTGCTACGTGGAAGATGGATTGGAGGGAGTTGGGAGCCTACTCCACATAGTTCAGGGGAGAAATGATGCTGTTCTGAACTTGTAGGGGCAGTGGGATGGAGCAGCTCAGAAAGCCTACGGTATTCCAACTGGCAGGGTCTCCTGTTTCCTCTATTGCCTGTTACCTTCTCGCTTGGCAATAGGCTTACCTTTGAGCATAGCCCTTCCCATCATGGGAAGACAGTGCCTGTGGCCTCAGTAGGAATGACAGGTATTTGCCTGAACACCCTTTTTGTGAATTGTTACCCTGCCCCCAACACTGGGGCAGAGTGGAGGAAGGAGGAAGAACCTAGAACACAGGTTCTGTGTTCCTGCCTCTCTTCCTCTTGAGCCCTTTCCTCTCCCAGGGCAAGTGCTGTTAGGTCACCTTTACTCCATTCCCTCCTTTTTTCACTTGGTGAGGCCTCACACACTGTACCTGCCCACGCAAAGTGTCACTAGAAGGAAGGGAAAGGGTAGTAGGATTCGTTTGCCTGTCTGGAGGTAGGATTGGTCTTTGTAGCTATTCCAGGTATGTCCATAAGTTTACCTAGGAATAGGGGAGCTGCCTGGGTGGAGAGGGATTTTTCTAGTTATGCATTTACATTCTTTTATCTGTCACTGGGTGTAATTATAAATTTGTGTCTATGTGTGAACATGTTAGTCTTTGTATGACTGTGTGTCTGTTGGCATTAGTGACACGAACTTTTAATCTTGCCATTTGGCCCTTGGGTATATGGCTGTGAGTGTTCTGTCACAATCACCATATATGCTGTGTGCTGTGTTCGTATATATATATGCAATACATACCAGTGTCAGCGTAATGGAGTGGTTAGGAACACAGGCGGCTTAGATTTAACCTAGAAACTGCTGTTTAGGAGCTGTATGACCTCAGGTAAGTTATTTAGCCTCCCTGGGCCTATTTCCTATAAAATGTAAATAGTAATAGTACTTTCTAGACTATCATATGCATCATTTTAAGAGTTTAACTTAATGTATAGACCAGTACTGTTCTACAGAAATATAATGCAAGCCACAATGTAATTTTTTTATGGTAGCCACATTTTTACAAGGCAAAAAGAGTGAAATTAATTTTAGTAATATATTTTCTTGAATCTGATAACATCCAAAAGATTATAATTTCTTTTTTTTTTTTTGGAAATGGAGTCTCACTCCATTGCCCAGGCTAGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCCGCCTCCCGGATTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTAAAGGCATGCGCCAACAGGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCCTGAACTCCTGACCTCGTGATCTGCCCACCTCGGCTTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCCAAGATTATAATTTCAAAATGTAGTCAGCATAAAAGATTAGTAATGGATATCTCACATTTTGTTTTTTATTCAGTCTTTGAAATCTGATGTGTATTTTACATTTCCAGCACATCTCAGTTCAGACTAGCTGCATTTCAAGTAGCCACATGTAGGTGGTGGCTACTTTCTCGGACAGCACAAGTATAGACCATTATAAGACCCTTACCAGCTACAAGTGTTAGCTATTATTCTTGTTGTCATTTATTATCAGGTATCTGTGAATTGTAGATGTCTGTGTCTTGTGTCTCTTGTCTGAATATATCCGGAGCCTTTGGGAAGAGTGGTGGGAGAGCAGTCCTGAGCTCTTTCTCCACCACCCTCATCCTAGAGAGCCTTCCTGGGAAGGTTTCAATGAGACCCCTGCCCCAGTTTGTGTCTCAGGCCCTTGTCCTCATAGCACCAGCCCCCAGCCCTGCCTTCTGTGCCTTGCCTACCCCACTCTCCTCCAGAAACCAGGCTGATTGTCCCTTGCCCCATCCCCTGCAG
Seq C2 exon
GTGGCCAGAATGGATTTGTGGCCAGGGGCATGGATGCTGCTGCTGCTGCTCTTCCTGCTGCTGCTCTTCCTGCTGCCCACCCTGTGGTTCTGCAGCCCCAGTGCCAAGTACTTCTTCAAGATGGCCTTCTACAATGGCTGGATCCTCTTCCTGGCTGTGCTCGCCATCCCTGTGTGTGCCGTGCGAGGACGCAACGTCGAGAACATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204310:ENST00000336984:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains