HsaEX1003128 @ hg38
Exon Skipping
Gene
ENSG00000204310 | AGPAT1
Description
1-acylglycerol-3-phosphate O-acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:324]
Coordinates
chr6:32171297-32178096:-
Coord C1 exon
chr6:32178001-32178096
Coord A exon
chr6:32175814-32175945
Coord C2 exon
chr6:32171297-32171505
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCTCCATCGGCCGGGGCTAGGAC
3' ss Score
3.36
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
TCCTCTTTTAGAGAATGTCCGGATTGCTATTGGACTTTGGAGCGTATGGCTCCAAATCAACTCATTGGCTAAAACTTGACGGAAAATGGTGGTTAG
Seq A exon
GACACCCCCAAATCCCGTCGCCCCCTTGGCACCGACACCCCGACAGAGACAGAGACACAGCCATCCGCCACCACCGCTGCCGCAGCCTGGCTGGGGAGGGGGCCAGCCCCCCAGGCCCCCTACCCCTCTGAG
Seq C2 exon
GTGGCCAGAATGGATTTGTGGCCAGGGGCATGGATGCTGCTGCTGCTGCTCTTCCTGCTGCTGCTCTTCCTGCTGCCCACCCTGTGGTTCTGCAGCCCCAGTGCCAAGTACTTCTTCAAGATGGCCTTCTACAATGGCTGGATCCTCTTCCTGGCTGTGCTCGCCATCCCTGTGTGTGCCGTGCGAGGACGCAACGTCGAGAACATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204310_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCAAATCAACTCATTGGC
R:
TTCATGTTCTCGACGTTGCGT
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains