GgaINT0143690 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1579935-1580695:+
Coord C1 exon
chr27:1579935-1579969
Coord A exon
chr27:1579970-1580536
Coord C2 exon
chr27:1580537-1580695
Length
567 bp
Sequences
Splice sites
5' ss Seq
GAGTTGAGC
5' ss Score
0.2
3' ss Seq
GATGTGGCCCTTCTCCATGGGCT
3' ss Score
1.66
Exon sequences
Seq C1 exon
AGTGAGCCCTGGAGCCCTCTCTGGGTGACACTGAG
Seq A exon
TTGAGCAACACAGAAGTATCCCATGGCCGGGGCACAAAACCCATACTACCAGAAGTAGGGAGGAGGAATGGGGGAAGGAGCACTGGAGGGCATGGAAAAGGGCAGTTTTGCTGCAGGTACATCATTGTCAGAGGGCGGCTGGGATGCTGGCTTTGGCCCAAGGGCCAAAGGAACCAGTGGGTCTGGGTGAGAGTGCACGGATGAGGCAGTGGGGCTGTAACCCCTCCAGATAAGAGGTGTTGGTGAAAAGCCATTGCAGTGCGTAATGGCGCAGCAGGATGCGTATCAGCAGTGACTCCTCAGGAGACCCAGGGTCTCTGGCGTTGACTCACCCCTTCTCTCCACCCTCACCTGCTGTGCCTGCCTGCCAGCCCTACAAGCCTCTGTATGGGACAGCTCCTTCCCTGGACCAGCCCCGAACGCCCACACACCAGTCTGCTGATCCACCGGCTTCACCTGCCCTGCTCTCGGCATCCCTACTCTCCACCCCAGCTCTGGGAACGCAGGCTGAGCTCCCCAGCATCCCCACACCCCAAGTGGCACAATGGATGTGGCCCTTCTCCATGG
Seq C2 exon
GCTGCTGCTCCTCCTCATCCTCCCCGTGCTGCTTTACCGGCACAGTGCCACCTTTCACTACTTCTGCAAAGTCACCTTCTTCAACATCTGGGTCTTGACCATGGCGACTCTCCTCTCCCCCTTCGCGGCGATTCGGGGACGCTGCGTGGAGAACATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000287:ENSGALT00000000376:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTGGAGCCCTCTC
R:
TTCATGTTCTCCACGCAGCG
Band lengths:
191-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]