BtaINT0017963 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15929831-15934837:-
Coord C1 exon
chr28:15934714-15934837
Coord A exon
chr28:15929934-15934713
Coord C2 exon
chr28:15929831-15929933
Length
4780 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
GTTAACTGTAACTACAACAGCCT
3' ss Score
2.26
Exon sequences
Seq C1 exon
GTGAAGATGCAATGACAGGCGACACGGACAAGTATCTTGGGCCACAAGACCTTAAGGAACTGGGCGATGATTCTCTGCCTGCAGAGGGCTACATGGGCTTTAGTCTGGGGGCCCGTTCTGCCAG
Seq A exon
GTATTTCACTGTTGCTCTTTACTCACAGTTAATTTAAAACAACCATGATGTCATAAACTGAAACCATTTTCATTTTTCACATTATCCCCAAAAGTGCCCTCGGGGTAAGGATGTGAATTTGGTGAAACGTACACATGCTCTGCTATTTTCTTTTGTGGTTTTCAGTCTTTAATTTTATGTGAGTGAACGTGTTAATTGTTTGTTCTGTTTTTCCCTACCTGGCAGTCATGCTTCAAGCATAATGTAGCAAAAGAGTGCACTGACAGAGTGAGGAAAACCAATCTGGGTCACATGTTTTAAAAATAAGTTTTGTTCCATAGTGAAAGAAAAATCCCATTTTCCCATAAGTAAGAAATATTTGTGTTGATTGTTCACTATACTCTTTTCATGACTGAAGGAACAATTTATGATTGTGACTTTTCTTAAAAGAGTGGATTCTTGGGAAAAAATACGTATCGCTTATTGGAATTGTCTAGCAACTGTGTGAGCATCTCTTCGAAAGCTCTGCCGTTTGTTTACAAGGGACATGTTAAAGGTGAAACGGTGACTTGATCAAAAGTCAGAGGCAGGAATGGTGGCAAATTCAGGGCTGAAAACTGAAGCATAAAGCTTTAGTACATGGAAAACCTTGGCTCCAGCCTGACCTGGTTGAAAGGAACAGGACCTTGTCCAGAATTTGGAGACTTCTTTTCCCTGGTTGGATTAACAGCATGTGTGCTGACAGTCAAGTTATTTTTAAGCTAATAATTAAACCTTCTGAGTTAGAGCCCTGGGGACATTTTCCTATAGTTTAAAAGTTTGTTGTAAAAAGTTTCGTTGTCTGATAGTAAATGGCACTTCCCACAAAGTAAACCTGGGAGTTTATTCTCAGTGTCGTTGATACGGGTAGTTTAGACTCAGAATTGATTTTTCTTTGAGTCAGTCTTTTTTTTTTTTTTCTTAATAGAATTTGAAACCTCATGTAACTTAATCAACTTTTGACTTTATACATATATTTATAGAAGGCTTTAAAAGCTTATTGCAGCAGGTGTCATTAATGACAAGAGGAAAATGAGTTTCTAGAAACATGTCATATCTCAGTTAATCACAGATAACAACAAGTTACAGCTGAAAATATGCAGAATCTTAAAGGACCTTAAGGAAAACTTCTGTTTAGAGACTTAATAGCTTTAGTAATCCAATAACTAGCTGATTCGCTTCCTCAGATAATACATAGAAGCTACATTTCATGACTCAGTCATTTGCGTGTAGGGGATTGTAGCAGCTGACCTCCAGTGAGAGATGAAACCAGAATATTGTCTCTTATAAACTTTCCACAAGACAGTTGTGAGGCTTTCATACTTCTAGTCTGGATTGCACCATTCCTCTTTGTTGCTATTATATGTAACTCATTTTTTGACATTGGCAACTGATGTTATGCTCAGAGGCAAATTTAAAAATATCTCTAAAGCTGATGTGTTTTTTAAAGTACTGTTAGAGTATTACCCAGTATAATATTCTGAGTGTAACATTTAAAAAGGAATACATTAAATGTGTAACTCATCCAACCATAACATTTTTTTTTCTTTTTTCCTGTCTGATTTTTTTTTTGCTTTCTACTTTTCCTGTTTTTTCTAAAAATACTTAAAAATAGTCCCAAGATCAGGTAAGAAGATATGACGCTTTGATGGTGTTTCTCCACCTTTCCCAGCTCATTTTCTCGTCTTTGTTTTCTCGGCATTGTGCTGTGCTGTGCTATGCTGCCATGTGCTGCTTCTTTTTTTATTTCTCTGCTCAGCTTTAGAAAATCAGTTTTGCAATTTGAGAAAATAAGCAAGTAGCTAAATGTGTAATAAATAATGTTACTTATGCAAAGTTGACTGAATACATGAGGAATTTATTTCCCTTAGCATAAAAGTTGTGTAGTGCATGAAGTAACTGGAGAGATCGCCCTGGGTTTATAGGCAGAGTCTTGACTGGGAGGACTGTTTGTTTGCTGAGTGCTGTTATCTTTGAAGTGTGCTAGGCACATAAACTTCAGAATTCTGAGGCATGTGTTTTTCTAACACTTCCTCTGCTTAACACTTAGGGTATACCGATGGCTAAAAATAATATCGTTGACCTCAGTGAAAAACAGTGTAATGCTTTCCAGACCCTCATGCAAATAATCTATCATTTAAGTAGCTGAAAGCACTTCTATGTGTTAGGATTCACGCTGAAGCTTGATGCCTTTAACGGGCTCTCCATCTGCCTAATGTAAGTTGGTCAGGAGTAGGAATTGTCAAATGAAGACATCTTTAGATGTTTCCACTGATGGCTCCCAATTCTAGGCTCTGTTCTTTCATTCACACTCCTACAGTAGTTGAAAGAAAGATGATTTTTTTTTTTAATCAATACATCTTAGATATGTTTAAGGACTAAACTTAAAATTAATGTGTAAACATTAAAAAAAACTTTTAAGTATTTGTTCACATGTACAGTAAAACCATCTCATGTACCACCAATATTATTATCTACCATGGGAACCATAATTTAGAGAAATTAATATCTGTATTGATCAGTGCAGATTGAGTACATGTCCGTCACTCTGTTGGAAAAGAAAGTTCTGTTGGATAGTGTTGAGTTAGAAAGTAGAAAGACAATTCCTGCTTTTATGAAGCTTTTATTGCATCTGAGAGGAGACATGGGGTTAGAAACAGGAATAACAACAACAAAAGTTTGCAATAAAAACAGGGGGGAACAAAGTGATGGGTCATGATTGGGCACTGGAGGCCCGACTATGTAAGAGGTCAGAGACACGTGGCTTACTAAGTAAGCTCTATGCAAGGATAATGCTCACTTTCTTTTTTTCCTTTTATATCCAATTTCTAATATTGTGTCCTGCCCATAAGAGTCACTTAGTAAGTATCTGCTCAAAACACTTAATAATGACTCTGTAGAATGATGTCTGTCTTAGAGAAAGTAAGGCTCTCATCCTAGGAGCACATACCGAGCCATTTGTGTAGACACTTGGAATAAAGCCTATCATTCAGGGGCCTCTGTATCTTGATATAAAGATATCCGCTTTGGGATAGTCTGTAGTGCATCCAAAATATATCCATATATGCCTTCAGTATTCTGTGCTTGCACAATATTTTGTGCAAGCACAGAATCATTTCTTAGGTATGTCTCCTTTGCTCTTTTCTCTGACAAGCACAGACAAAGCAGGGCTGAGGCCAAAGTCTGACCAGTGTTGCCGGTAAAGATTCAAGCAGCCATGTTTGGATCAGACACTTTACTACTCCCTAGGCGGGGCCGACTTGCCGTGGTCCTTGTCCTCCACACCTTCGGAAAGATGACACCGAAACCAAAGGGGCTGTATGTCTACCACATTAGCTGTGAGCTTCCCCATTGCTGAGGAGCCCATTCCAGAAGGCCGGCTCAGCACTCTCGTATTCTGCAGCTGTCTTCCAAGGATGATTAGACAGAAAGCCTCAGACCGCTTTCAAAACAGGAGCCAATGAGAAGCCACCTCATGACCACCTACCTGGTAGGGAGGCAAGGGGCCTTGAAGCAGCTTCTCACAAGACTCCATGCTCTGTGTTCCTGAAGGATCACCAGGGTTCTGTCAGTGCTTATATGAGCTGCCACCCCAGTCTGCCTGGATATTATGTAGATATATGTAGATACGTGGATATATGTAGAGTTACTAGGATCCCTTACTCTATTGATTTCTTTTTTTTTTTAATCAAAATATAACTGACAAATAAACATTATATTAATTTCAGGTACATAACATAGTGGTTCCACATTTGTATATATTGCAAAACAAGCACCATAACAGGTCTAGTTAACACCCATCACCACACATAGTTACACTTGTTCTTTTTAGGCTAACAGATTTTAAGGTCTCACTTAGCAACTTGCAAATATGTGAAACAGTATTATAAACTATAGTCAGCATGCCGTACAGTAAGTCCTCAGGTCTTACTCATTTTATAACTGGAAGTTTATACCTTTGGACCACCCTCACCCATTTTTCCCATCCCCCAAGCCTTCTTGGTATGAGTTTAGAGGTCAAGGTGGTGAGTGGCACTTTAGGACATCAGGGGTCCTGCACTCTGGGAAGTTCAGAGACTGCATAGAATATTGAGAAGGACTAGGAAGGAGAAGAGCAGAAGAAGCAAAGCTAAAAACAGTTCAGTAAGAAAAGGCAAGATAATCGTGTATGGAATTTGAATTTTTCACAGCCAGAAAGATGGAAAAAAGATCATGTCGGGATAACACTTCTTGTTTCTTCATGTTTTCCATGAGAAGCAATTGCAAACCAGAGCTCTCAGTAGGTTAAACCTGCGTCTAGTTCCCAAATTCTGATTAACAGATGCATTTATAGCAACGTAATTCCATTAAATAGTGTGAGACAGATGAATGCGGACCAGAAAGAGAGGAGACTCTCAAAGAAGATTTTAACAAAGAAAAAATCTCTCCAGCTATCAAATTACCTAGAGTCATCTGGTTCTTCTGAATTGTCGTGTTGGTTCAACTCTCACATAGAAACATCCAAAGTCTTCCTATATTTCATCTTCTCACAGACTGAATACCAGACAGCCTAATTTTAAACAAAACCTGATCATGAGGTTATCTAAGCTTAAGAAATGTCCTCAAGTATAAGGAAGTTCATTTTTGACCATGTCTTTTCAAGAGCAATTTTGGTTGATATTTTGAGCCATCTTGCCTGTTCCGAAAGTTGCATGCATTAATGTTCTTTTACCCATCTCATCATCATCTCCCCCTCTTGAATGGTTAACTGTAACTACAACAG
Seq C2 exon
CCTCCGCTCCTTCAGCTCGGATAGGTCTTACACCTTGAACCGAAGCTCCTACGCCCGGGACAGCATGATGATTGAGGAGCTACTGGTGCCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052:ENSBTAT00000025371:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]