HsaINT1003646 @ hg38
Intron Retention
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60134271-60139087:-
Coord C1 exon
chr10:60138964-60139087
Coord A exon
chr10:60134374-60138963
Coord C2 exon
chr10:60134271-60134373
Length
4590 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
GTTAACTGTAAATACAACAGCCT
3' ss Score
0.83
Exon sequences
Seq C1 exon
GTGAAGATGCAATGACCGGGGACACAGACAAATATCTTGGGCCACAGGACCTTAAGGAATTGGGTGATGATTCCCTGCCTGCAGAGGGTTACATGGGCTTTAGTCTCGGAGCGCGTTCTGCCAG
Seq A exon
GTACTTCGTTGTTGCTGTCTTTCATAGTTAATTTAAAACAACCATGATTTGTCATAAATCAAAATCATGTTCATTTTTCACATTATCCCAAAATGTGTTCTTTGGATGAAGATGTGAATTTAGCGAAATGTTCTCGACGCAAATACACATGCTCTGCTATTTTCTTTTGTGGTTTGCGGTTGTTAATTTCATGTGATTGAACATGTTAATTGTGTGTTCTTTTTTTTTTTCCCACTTTGCAGTCATGCTGCCAGCACAGTAGCAAAAGAGCTCACTGACAAAACTGGGAGAACCAATCTGAGTCACATATTTCAAAATTAAGTTTTGTTCCATATTGAAAGAAAGTATTATTTGCTAATAAGTGAGAAATATGTGTATAGATTGTTCACTATTCTCTGTTACTGAAATAATAATTCATGATTAAAAGAGAGCATTTTTGAAAAAAAATTATGTTGTTTATTAAAGTTGTCCACCAAGTGTTTGAGTATCTCTTCTAAAACTGTTCCATTATTTTGTTTACAAGGGACATGTAAGAAGTATAACAGTGATTTACCAAAAGTCACAGACAGGAATGGTGACAAATTCAGTTCTTACAACTGAAGTGGAAAACTTCTGTATGGGAAAACCTTGACTCAAACTTTTCTTAAACTAGTTGAAAGAAACAGAACCTTGTGCAGAATTTGGAGACTTCTTTGCCCTAGTGTGGATTTTAAAGCTAATAATTAAACCTTCTAAGCCAGAGCCCTGAGGACATTTTCCTATAGTTTAAGGATCTGTTGTAGAAAGTTTCATTGTCTAATAGTAAATGGCACTTCCCACAAAGTAAACCCTGGAGTTTATTCTCAGTGTAGTTGGTGTGGCCAGTATGGATATTGAATTGATTTTTCTTCTAGTCTTTTTTTTAGTAGGAATTTGAAACTCATATAGCTTGGTAGAACTTTTGCCTTATAAATACATTTATAAAAGGCCTTAAAGTCTTATTGTAGCAGGTGTCATTAACAGGAAGAGGAAAAATAACTTTAAAAAAATATGCAATCTTTTAGGCGATCAAAGATAGCAACAAGTTAAAATGGAAAATATGTAGAACTTTTAAGGTTCTTGAGATCCTGTAGATCTTGTTTAAATTGTAGAGATTTATAGCTTTTGAAATCCAATAACTAGCTTGCCTTCTGTTCTTCTGATAATATATGACACATTTTGTGATCAGTCATTTTTATGTAGAAAACTGTAGTAGCTGACCTCCAGTGACATAGGAAACCAGAATATCGCACTGTATTTTTTTTCTTAATATAATTCCAAGGCTTTCACACTTCTAATTTTGATTGCACTATTATTTGTTGCTATTATATGTAACTCATTTTTTTTACTTTGATGACTCATGTTATGCTCAGAGGCAAATATTTTTTAAAAATCTATAAAGCCAATATTTTTAAGCACATTGTTAGAGTATTATCAAGTAAAATATATTCTGAGTGTAACATTTTAAAAGGAGTACATTAAATGTGTAACTCATTCAACCATAACATTTTTTTTCTTTTTTCCCTGTCTGATTTTTTGCTTTCTATTTCTTGTTTTTTTTTTTTTTTTTTCCTAAAATTACTTTAAAATAGTCCCAAGATAAGGTAAGAAGACATGGCACTTTTATAGTGTTTCTCTTCCTTCTCCTGGCTCATGCTCTCATTTTTATTTTCTTTAGCATTGTAATGTGATGTGCTGTGATGTGCTGCGATGTGCTTTCTTTTTTTCTGCTCAAAAGCTTTAGAAACATCAGTAAAAATTTTCTGATTTTAAGAAAAGTAGAAAGTATATAATAAATATTACTTACGCAAAATTTACCAGATACTTAAGGAATTTCTTTCCCTTAACAAGTTTTGTATAGTGCATGAAGTAATTAAAGGAATTTCACTGGGTTTGCAGAAAAAGTCCTGATGTGAAGGGCTGTTTGTTTGCTGGTTTCTGTTTTATTTGAGTTGTGCTAGGTAAATTAGTATAAATTTAGAATTCTGAGGCATGTTTTTCTAACACTTCCTATATTTAACACTTAGGGTGTACTGATGGCTACAAATAGTTGGCCTTAGTTGAAAACAATTTAATGTTTTCTAGATCCTCATGCAAATAATCTTTAATTTTCAGCTGAAAGTACTTCGAAGTATTAAGGATTCCGAGTGAAACTTGATGGATTTAATTGACTCCATATGTCTAATTTAAATTGGTCTGGAATGATCAGAAGTAGGAACTTTAGACATTATGCAAAATGAAGACATCTTTAGGCCTTTCGGTTGATAGCTCCCAATTCAGGGCTCTGTTCTGCAGTTGGCACTCATAGAGAAATTAAAAGAAGGAGGAGATGTTTAAGAAGTATCAACAAAGTTTAGATACATTTAAAAATGAAATTAAAATGAATAGGTAATTATTTTTTAAAACTTTTAAGTGTTTGTCTACATAGAAAACTGTTTCATACACCCCAATGTTAACATATCATGCCATGGGGACCATAATTTGAAGAAATGAATGTCTAATGCAGAGAGTGGCCGGCGACTCTCAAATCACACCACTGGAGCAAAATTTAACATTGTTATTAATACTTAGAAGCTGCACTAATAATGTAGCCACTAGCCACCTATAGTTACTTAAATTAAAATTAGTTAAATTCATTTGTTCGTTCACACCAGCCACATTTCAAGTGCTCAGTAGCCGCTGTTGTTGGATAGCTCAGATTTAGCACATCCCCTTCATAGGATAAAGTTCTGTTGGACAGTGTTGAGTTAGAGAATTCCTGCTCTTAGGAAGCTTCTACTGTATTTGAGAGAAGGTAAGAGAATAGAAACAGGAATGGCGGAAAGAAGGGCTTGCAATTGAAACTGGGGAAAAAAGAGAGTAATGGGTCCCATGATTGGGCACAGAGGGCCTGACTGTGCAAGTGGCTAGAGTCATGTGGCTTACTAGATAAGTTCCTCTGTGCAGGAATTATGCTTATAATGGTCTTTTAGTAAGTTTTGCTGAATACATTAAATAATGACTGCAGAATGATGGTTGTTTGGGGATAAGAGAGGTCCATCTGAGATTCTGATAAAAGTGAAGGCTCCAATCCTAGAAGAATGTACGTACCTATCTGTGTAGACACTTAGAATGAGGCCTCTAATGTCAGGAGGCTCTGTACCTTGATAAAAGGATACCCACTTTCTGATTTTCTTTAGTATAGCAGGCAGTGGGGAAAAGAAATTGTTTCATGCAAAGAATCATTTATTTACCTCTTATGTGTATCTTCTTTGTTCATTTCCCCATCAAGCACACAAAAGGCAAGGCCAAAGCCAAAGTCTGGCTGGTTCAACTGGTAAAGATACAAGAAGGCACTTTTAGATCCAGATGGTTTTTTAATTATATAGGCAGTGAAAGAAGAAGTGAAAGGTGCTAGCTTCTCATGATCCTTGTCCCCTACACCTAAAAGGACACCAGAACAAAAGGGGCTGGATGTCTACAATGCTAGTTATGGGATACCCCATTGCCGAGGAGCCAATTCTAGACTTCAGCTAAATGGTTTTATATTCTGCAGCTCTATTCCAAGGAGAGCAGAATAGGAAGCCTCATACATCATTAGAAAGAGGAAGTGATGAAAGCTATCTCATGACAGCCTCCCAGGTGAGATGGGGAGGTGAGTAGCAGATGATCTCGTGGAAGCTCCTCACCAACCTCCATCCTCTCAGTTCCTGGAAGATCACAGGGTGTTCTGTGAAGACTCAGATTAGCTTCAATTCCGGTCTTTGCCTGTATGACTTATGTGAATATATGCAAGGTCACGAGAGTGACATGGCAGAACTGTTCTCCCAAGGGCCCTGACTCTATTGAGTTTTAGTTTAGAGGTCACTGTGATGATGGCATATCAGGGCATCAGGGTACCTGCATCTGAGAAGTTCAAGGGCCATATGGAGGATTTGACAGTGGCTGGAAAGAACAGTTGGAGGAGCTAGAAAGACAACAGTAGAGCAAAGAAAGAATATTTGCAGAAAAGACCAAATAACCATGCAGGGAATATGAATGTTTCCTCAAAGCCAGGAAGATGGCAAAAAGGATCATGCAAAGTGTATTCATAACACTACTTCCTTCTTGATGTTTTCTATGAGTAGCAACAACAAACCAGAGTTCTCAGTAAGTCCCAAAGACTTATAAACAGACCCATTTAAAGTAGACATAATTCTTATCAGTAGCGCATGTCAAGTAGACATAGACCAGAAAGAGGAGACATTCTAACATAAGATCTCATCCTAGAAAAATCTGTCAACTATCTAGAATCATCTGGTTCTTCTCAATTGTCATGTCAGTTCAACTTCATAGTGAAACATCCAAAGTTTTCATGCATTTCATATTCTCAAAATTGGCCTAATTTTAAACAAATTCTAATCATAAGGTTGTCTACACTGAAGACATTTTCTCAAATACAAGGGATTTTACTTTTCACTATGTCCTTTCAAGAACAACTTTTGTTGATATTTTTAGCCATCTTGCCTGTTCTTAAAGTTGCATGCATTAATTTTTTTTTATTCATCTCATCATCATCTACCACTGTTGAATGGTTAACTGTAAATACAACAG
Seq C2 exon
CCTCCGCTCCTTCAGTTCGGATAGGTCTTACACCTTGAACAGAAGCTCCTATGCACGGGACAGCATGATGATTGAAGAACTCCTTGTGCCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150:ENST00000280772:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=NA C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains