BtaINT0018341 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17959361-17960588:-
Coord C1 exon
chr13:17960555-17960588
Coord A exon
chr13:17959431-17960554
Coord C2 exon
chr13:17959361-17959430
Length
1124 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGTATGTTTTTGCTCTAAAGATT
3' ss Score
6.2
Exon sequences
Seq C1 exon
AGGATGAGAGTTCTGAAGAAGACTCTTTAAGCAG
Seq A exon
GTAGGATTTTATGGATGTTTTAAAATTGTATTTTAAGTAAGGGAACACGGAGAAGAGAAACTAATGTTTGTTGAGTGTTCTACTCTGGGTCAGACACTGCATTACGTGCTTAACATCTGTGACCTCATAGAGTCATCACAGCAGCTTTGTAAAGTAGCTGTGTCCTGCTTTTACTTAATTAGCCAACTGTGGTTCAGGAGGTTGACGAATTGACCCGTGATTCCATGATTAAAATGAGTTGACCTGTGATTTGATAGCTGGCCTGCTTGGCTCCCACGTCCACTCTCATGTCCCTCAGCAGAGACTGAGAAGTACTGTGTAGCATATAAGTTAAACATATAAATTAGTTCTTTGATTTCTGTCCATTTTAAGTTTCAGACACTGGCAAGAACTCCTGTACTGTTCCAGAGTGTAGGGGAGGGGTGGGGCCATCTCAGTAAGTGGTTTCGCTGCTGAAGGACCAAGACTGCCATTTTTGATGGATGCCATTTATTTAGTCTCTGAACTAGGGGCAGAGAATGGAGAAGGAACAGCGTATCTTTCCACTTTGTTTTAAGTCATTACATTTGTCCCAGTTTGGGCAAACAAGTGTTATGTCAATCCACCAATTCGATTTTCAGTTCAGTTATTAGGACTTTTGGTGAAAACAAATTATTTTCAGGCTCCGCCAGTGTATTTGCTGTCACTGTATGTCGTGAAAACTAAGAATGAGTCTTATCTAGATATTTCAATAGTTGGGAGACGTGGAAGCAGAAATAGGTAATTAAAAACCTTTTAGAGACTTCACTGGGATTGCAGTGGTTAAGATGGTTAATAAGACCTCTCCTCCCATTGTAGGCAGTGTGGGTTTGATCCCTGTTCCGGAAGCTAAGATCCCACATGCCTCAGGGTCAGAAAACCAAAACATAAAATAGAAGCAACATTGGAACAAATTCAAGAAAGCCTTTAAAAGTGGTCCACATCAAAAAATCTTTTTTTTTTTTCAAAAAAAGCTTTTTAAAAACAGAGACCAGGTTTTAATTATGTCAAGAAACTTCATTTAATACGCAGATAGCCAAACTTGATCACTTTTTTTTTAAGAAATGAACTCACTCATTTTTGTTGTGTATGTTTTTGCTCTAAAG
Seq C2 exon
ATTTTCCAACAAACCTGGTGTTGATTCATGGCCTACATCAGATGATGAAGACTTAGATTTGGAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288:ENSBTAT00000022622:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development