HsaINT0008667 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27368018-27371762:-
Coord C1 exon
chr10:27371732-27371762
Coord A exon
chr10:27368091-27371731
Coord C2 exon
chr10:27368018-27368090
Length
3641 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
TCTATATTTTTGTTCTAAAGGCT
3' ss Score
6.5
Exon sequences
Seq C1 exon
TGGATGAAAGCTCTGAAGACTCCTTAAGCAG
Seq A exon
GTAGTATTTTACAGATTTTTAAAAATATATTTAAAGGAATACAGAGAAAAGAAACTGTTGAGTGCCCTACTCTGGGTAGACACCATATTATGTGCTTCTCCATATAGTCGTCCCAACAGCTTTGCAAAGTATCTGTGCTATATTACAACCCAACTGTGTGGTTCAGAGAGGTTGATTAATTGGCCCATGACCTCACAGTGAGCAAGCAGCTGACCCATGATTTGACCATCAGCCTGCTTGGCTCCCAAATCCCTTCTCTTGCCCCTCAGCATAGATTGATAGAGACCTGTGCGGTGCTGGATCAAGGTACAGGTCCAAATCAGATCAATTCAGAGACCTACATTTAGTTCTATGTTAACTCTCAGAGTTTTTCTTAGGAGCCTGGTTAGTCCAACAATTTGTCCTAATATGCTTGATAATTGCAGTGGTAATTAGTACTTTGACTTTATCATCAAAGGTTTTAGGCCAGATCTCACTTAGCTGTGGCCACAGGGCCATACATTTTACATAAGCAGACCACACAAGTCCTATAAAGGAATTATTTTACTGTAAGTGAAAACTATTTACCTATAGACCATATTGTGTTAATTATATTTAGCATCCAGTTAGAGGATATTTCTGGTTTATTTCTCTACCTACTGACTTCCCAGTTTGGTTTTCCCTTTAGGCTAGTACTCTAGCTCCATCTGAGTTGCTGGAAAGGATATGATTTTGTTTCTCTCTCTCCCTTTTTTTTTTTTTTTTTTTTTTTTTAAATAACTGCATAGGGCTGGGCGTGGTGGCTCACAACTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCATATCACAAAGTCAGGAGATCGAGACCAGCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAGAATTAGCCAGGCGTGGTGGCGCACGCCTATAGTCCCAGTACTCAGGAGGCTGAGAAAGGAGAATGGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGGGACTCTGTCTCAAAAAAAAAAAGCATAGTATTCCATGGAATATTTATACCACATTTTCTTTATCCAGCCAACTGTGTTCCTATTATTTTTTTCCATTTCTGCCAGCTAAGTATTCCTCATTTTCCTATCAACAGAATCAAAAGCACCTAGAATTTCAGGATTTTAAGGAATCAGACTAATCAGAATGCCATCTAGTACTTCAATCTGTGTTTAACATCTTGGTCAAATGGTTCAGATGGAGAACCTGAAACTCAAAGAGATTAAGGGGATTTATTTGGATATGATATTCAAACTAATTTCAGAGCCCAGTACTCTTCCTTCTTTATCATCCTACAGGTTAATATTTTAATAATAGAAAGGGTGAGTGGATCTAGTGAACCCAGCGGAAAAGGAAAGAATGGAATTAGCAGAGGAAGGCCAGGTTTGAAGAGAAACAGCACTGGGTTGGATAGGAACCGGGCTTTTGGAAAAGAGATCAGAATATTGGGGTTTTTGACAAGTTCGATAATGATAAATTACTGGAATGAAGGATACAGGATGTTTGGAATTATCTAGAAAGGCATATTAAAATAGGGGGTTCAGGGGAGTCCTGAACAGGTTGTTGCTTTTTTATATAATTGGAGGAACTGACAAACTCTCAAGGTTTCTACTGAAAAATGTTAAAATAATTTGAGCCACTGGGAAGAGTCTCTACAGCCAGTAGGAATGTACTATAACTACTTCTGCCTCAACTTATCGGTGGCTTTGAGCCCCTCAAGTACTTTGGAGCTGGAGGCTGCTGAACTACATAGATCTGTGGCCCAGGGCAGGTGTCCCCTCACCTCTGCCTCCTTTCCCAATTCTCTGATGTCCTTCTCATGGACATGTAGGGTAGGGCAGGGGTAGGATTAGCTGGCAAGTCAGTCATGGAGCAACCCAAATCATGGAGTTGGGTAGTTGTTAACATGCCTGTGCTGCTGGCAGATGACAGAGACTCCATTTAGCTTGTTTTCCAGGAGCAGAGATATAGAGAGCTTCTACTCTTGGGCATTTGAGACCATCCTTTCAGGAATTTGTGCCTTCATAGGCTGAAGACTTAAAGGTTGGAGATGCTATGGAGCCCTGCAGAAGAGGGATCTGTAAGTGGGAGCTTATAGGAAGGAAGGTGTTTAGATAGTACTTAGGGAAATATAGGTACAACTACCAGGACTCTTTCTCCAGCATTCTTTCTCTTTAGGTATCTGAGTGCCTGTAAAGATTTTTAAGGGCTTGCTAGTTTAAGGCAGGACCTCTATAGGGAAAATAATTGGATTTTATAACTTTTAATGTTTTAATATTTCTGGGGTGAGTAGTCCCAATAACAGCATATACGTATGTGTTTTGACTTTTGCCCATCTAGCTTTCAAACATTTCACACATTTCAGGGGACTCCTTATACTGTTTTAGGGTGAAGGGAAGCAATGAGGCCTTAAGTGGTTTTCATGTTGAAGAACCAAGACTGCCATTTTTGAGTGACACATATTAGTCTTTGAAATGGAGATAGATAGTGGAGAAAGGACAGTGTATCTTTCTACCTTGTTTTATGTATTTATTTATTTATTTATTTTATTTTATTTTATTTTATTTTTTTTGAGACAAAGTCTTGCACTGTTGCCCAGGCTGGAGTGCTACAGCATGATCTCAGCTCACTGCAATCTCTGCTTCCTGGGTTCACACAATTCTTCTGCCTCCACCTCCCAAGTAGCTGGGACCACAGGTACACACCACCACACCCAGCTAATTCTTTGTATTTTTAGTAGAGACAGAGTTTCACTATGTTGGTCAGACTGGCCTTGAACTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGGATGAGCCACCGTGCCCAGCCTATTTATTTATTTTTATTTTTTTGAGACAGTGTCTTGCTGTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAATCTCTGCCTCCCGGGTTCAAGCAATTCTCTTGCCCCAGCCTCCTTAGTAGCTGGGATTACAGGCACATGCCACCACGCCTGGTTAATTTTTGTATTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGATCTCGAACTCCTGGGCTCAAGTTATCTTCCTGCCTCCGCCTCCCAAAGTTCTGGGATTACAGGCACGAGCCACCGCATCTGATCTCCACCTTGTTTTAGATTATCAGGTTTGTGCTGGTTCAGGTAACGAAAGTTATATCAGCCATTAATTGGATTTTCAGTTCAGCCTTCGGGACAATTTGTGAAGACAAAGTATTCCCAGGTTCTGCCATTATCTTGGCTGTCACTATTAGTTATAGAACTAAGGTTGAGTCTTTATCGAATATTTTATAGTTTCGGAGAGGTAGAGGCAGCAATTGGTAACTAAAATATTTTTCAAAAACAAGATCAAATTTTAATTAGATCAAGAAACATCATTTAATATGCAGACAGTTGACCTTTCACCAGGTTTTTGTTTTTTTGGAGGGGGCATCCAGATTGAAAATTGTAAGCTGGTTTTTGTTTTGTTTTTAAAGAAATGAATTCACTCATTTTTCTATATTTTTGTTCTAAAG
Seq C2 exon
GCTTTCTGGCAAACCGGGTGTTGATGATTCATGGCCTACCTCAGATGACGAAGACCTCAATTTTGATACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=NA C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139001=GVQW=PD(7.7=12.0)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)