BtaINT0022833 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016167 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr11:20695687-20697006:-
Coord C1 exon
chr11:20696879-20697006
Coord A exon
chr11:20695744-20696878
Coord C2 exon
chr11:20695687-20695743
Length
1135 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TGAGTCTTCTGTATTTTTAGGCT
3' ss Score
8.05
Exon sequences
Seq C1 exon
ATATTGATGAAGAGTTTAAACGAGAGCTTCGAAATCTGGTTCCATTGCTCCTTGCCCCAGAAAATTTGGTAGAAAAAGAGATAAGTGGATCTAAAGTCACTTGTAGAGATCTTGTAGAATACTTTAAG
Seq A exon
GTAGGAAAATACTTATATTAAATGACTTTGTGTAAGTTAGAAATATAGTTGACTTAAAACTCATCTGTATGGTATAAAAATTTATCTGTATTTTAAAACAATGAAGTAAAATTTATAATGTATTTTTTTGCCTTGAATTGGATGTATCAATATTTTAGAATATTGAAGATTATAGCAGATTGTAACACGTATCTTCTACACAGTAATTTTATTTGTTTATACAGTTATCTTACTTTTTCTCCAGCTCTGATATGCAGAGAAGAACCATTCATAATATTATAATACCACTCTTATCATTTGAAAATAATAATAGATATTGGGAGCATAATTCTGCATCTTGAGTTCTCATAAAAAACCTTGTCTCAGAGTCTGAGTACTTGATGAGAGCCTTTGAAAGTTATCAAAACTGGGTTCTGAGCTCAAGTAAATTATTCATAGATTATTTCCCCCCCCTCTGCTCTCTAGTCTTTATAGCTTACTTGCCAGAGGAAGGCCACTGTTGAGGGTTGTAATTATTTGTAGTAGTTGTAGATGGATGGGAAAACACAGTTAATGAAAGAGTGTATTTTTGTGTTATTTAGTGGACACTTGATCACTTTCATACTGTCTTTGTTTAGTTATGAAATAATTTAAGAGTCAGATGAAAGTTGAGATGAAAGATTCCTATATGGAACTTACCTAAAAATTTTCATCTTTCTTACTCTTAAACCACAAATTCGGTAATTTTTTTTGCTCTTGAACTGAAATATACTTTAATCTGATCAAAGTAAAATACTGAGTTAAAATGTTTTGTTACATATTTATTTGAAACATTGGCAGTTTGGCAGTAGGAGAGAATTGTGGATTTCTTTTCATAGGGTAGATAGCATTTTATATATAACTTTAAATATGAAACAACTTTTCTGCCAAGTTGGAGTTACATTTAGAGATATTTCTCTAGGATATTACTTAGCAACACACGTTTTTAATAATGTTGAGAATAGGGTTAACTTCGTTGGAATGAGAGTATATGATTTTTAAAGCTTAGACTTTCCTTTTAATAGTGTGAATCATTTTTCTATCTAATGATTTTTCTTTGGCGATATGGAGCCAAATTGCATAACCTATCAGTATAATGAGTCTTCTGTATTTTTAG
Seq C2 exon
GCTTACATTAAAATTTATCAAGGAGAGGAACTTCCACATCCAAAGTCCATGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016167:ENSBTAT00000061283:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(9.6=60.5),PF028419=GBP_C=PU(10.7=32.6)
A:
NA
C2:
PF028419=GBP_C=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAAGAGTTTAAACGAGAGCT
R:
CTGAAGCATGGACTTTGGATGTG
Band lengths:
182-1317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development