BtaINT0024985 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27287579-27288169:+
Coord C1 exon
chr23:27287579-27287723
Coord A exon
chr23:27287724-27288091
Coord C2 exon
chr23:27288092-27288169
Length
368 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
GACCCTGCCTCCTGCCCCAGCAC
3' ss Score
6.38
Exon sequences
Seq C1 exon
GGACGTGGCTCGGGGCTATGAGAACGTCCCCATCCCCTGTGTCAATGGTGTGGACGGGGAGCCCTGCCCCGAGGATTACAAGTACATCTCAGAGAACTGCGAGACGTCCACCATGAACATTGACCGCAACATTACCCACCTGCAG
Seq A exon
GTTAGTGTGGGGCCCTGGGACCTCCTCCCAAAGGGGCACCCAGAGCCGCTAAGTGGAGCCGGGCACGTTGTGCCAACAAGGATGTCTGGCCAAGGTGTTGGGGCTGAAAGGGACCTCTGGTGTGGGCTTGCATCCACCTGGGGAGGGGGACCTTTTTCTAGGACACATGAAGGTATCACATAGGCTCATGGTGGCCCTAGAGATACCCGCATCAGCAGCATCTTGATTCCCCCTCATCCTGGGACCATCACCACCACTACCTTACAGTGTGGACCCTAGAGAAAGGACAGCAGTTGGGGGCTTGTGGGGGGAAGCTGAGGGGCCTGGGCCGATTCTGAGGGGTGAGCTGACCCTGCCTCCTGCCCCAG
Seq C2 exon
CACTGCACGTGTGTGGATGACTGCTCCAGCTCCAACTGCCTGTGTGGCCAGCTCAGCATCCGCTGTTGGTATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676:ENSBTAT00000007456:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PU(44.3=95.9)
A:
NA
C2:
PF0503311=Pre-SET=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGGCTCGGGGCTAT
R:
CTTGTCATACCAACAGCGGATG
Band lengths:
222-590
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]