MmuINT0056005 @ mm10
Intron Retention
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:34910691-34911055:+
Coord C1 exon
chr17:34910691-34910835
Coord A exon
chr17:34910836-34910977
Coord C2 exon
chr17:34910978-34911055
Length
142 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTCCTACTTTTCTCCCACAGCAC
3' ss Score
10.71
Exon sequences
Seq C1 exon
GGACGTAGCCCGAGGCTATGAGAATGTACCCATCCCCTGTGTCAATGGTGTGGATGGGGAGCCGTGCCCGGAGGACTACAAGTACATCTCTGAGAACTGCGAGACATCGACCATGAACATCGACCGCAACATCACCCATCTGCAG
Seq A exon
GTAAGGCACAGCCCCGCTCACCATGCTGTGGGAGCACCTCCACACCAGGATGGGGGGCATGAAGACTCCCCCTCACACTGGGACCACCACCACTCACTGTCCTGGAACATGAACCCCACTCACTCCTACTTTTCTCCCACAG
Seq C2 exon
CACTGCACGTGTGTGGATGACTGCTCCAGCTCCAATTGCCTATGTGGTCAGCTCAGTATCCGATGCTGGTATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787:ENSMUST00000013931:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PU(44.3=95.9)
A:
NA
C2:
PF0503311=Pre-SET=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGAGGCTATGAGAATGTAC
R:
ATACCAGCATCGGATACTGAGCT
Band lengths:
210-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types