GgaINT0126656 @ galGal4
Intron Retention
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2067583-2068475:+
Coord C1 exon
chr17:2067583-2067727
Coord A exon
chr17:2067728-2068397
Coord C2 exon
chr17:2068398-2068475
Length
670 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCTTCTGCTTCTCTTTCAGTAT
3' ss Score
11.04
Exon sequences
Seq C1 exon
AGACATTGCCCGGGGCTATGAGAGGATCCCGATTCCCTGCATCAATTCAGTGGACAGTGAGCCTTGTCCTAGCAATTACAAGTATGTCTCGCAGAACTGTGTCACCTCCCCTATGGACATTGATAGAAACATCACCCATTTACAG
Seq A exon
GTGAGGGATTGTGTTTCTTGTTCTGCTGTGTATAGAGATGTTGCAGTGCACTGCACCTCAGACCAAGTTTTGCATTTAGAATGGGAATGTCTCGTCCTAATATCGAATTCAAGCCAAGGTTGTAGTCTGAAATTCCAGGAGGAGGGATTCTGCTGTTCTTCCTTTCCCAGGCTTCACCTCACCTCTGCATTCAGCTGTTAATGCAGCATCAGCCTGGTGTGGCTCCCATTTGTTTATCCATTTCCTCTGTTCTGGCTGTGAGAGTTAGCCAGTTATTTGGAGACCTTCCTCATGCTGTCTTCCTAGTGAATTCAGAGCTTTCCTTGTCCTCAAGCGTGGAGCTCACAGGGCACTGAGGAGGGTTTGTAACATGGGGAGAAGGTGAAGGTGACTCATGTTGGGATCCTCTTCTGCAATCTGGACTCCTTTGACATTCATTATGCATAGAATTGAAGAACTGAGTGAACATTACCCTGAACTGATGAGTCTGGTTATCTTTTTGGCCAATGAGCTGCAGCAGTGGCCTCTTTTGGGAAAGTTTGGAAGGCACTCCAGCAGCAGGCAGGAGAAGGCGAAGACTTGTGGTTTTGCTCGCTGGCCCACTTAGAGAAGTTGCTCTTTCACTTGTGCTGGAGTGGCTTGGAGCTGATCCCTTCTGCTTCTCTTTCAG
Seq C2 exon
TATTGCGTATGTATAGACGACTGCTCCTCCAGTAACTGCATGTGTGGCCAACTCAGTATGCGCTGCTGGTATGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PU(44.3=95.9)
A:
NA
C2:
PF0503311=Pre-SET=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGGCTATGAGAGGATCC
R:
CTTATCATACCAGCAGCGCAT
Band lengths:
214-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]