MmuINT0055979 @ mm9
Intron Retention
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24659463-24660424:-
Coord C1 exon
chr2:24660280-24660424
Coord A exon
chr2:24659541-24660279
Coord C2 exon
chr2:24659463-24659540
Length
739 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
GCAATCCACTCTGTTTTCAGTAC
3' ss Score
6.64
Exon sequences
Seq C1 exon
GGATATCGCTCGAGGGTATGAGCGCATTCCCATTCCCTGTGTCAATGCTGTGGACAGTGAGCTGTGTCCTACCAACTATAAGTATGTCTCCCAGAACTGTGTGACATCCCCCATGAACATTGACAGGAACATCACTCATTTGCAG
Seq A exon
GTTGGTGGGAAGAAGGGGCGGCAGATCCCTAGAACTTGGTCCTAGCACTTAGCACCATTCTGGAAGAAGGCCTGTGGAAGTATCCCAGGAGATCCTGTTCTCTTTGTACTTGTCTTGAAGGAAAGAAGTGGAAGAAAGATAAAATTCTCAAGTTCTCTGTTAGGCAGGACTCCAGTTTTCCTAGCATACTTTGAAAGCCTATTGAAGGCCCTAAGTGTCCCTATCAGTGGTTGCTCAGAGCCCAGTATCTCCTGGTCCTTAAGTCATGAGCAAGAGGGTCCATGTTGGTCTAAGCAGTGCACTGCATGCTCCCCAGCCCCAGCAGCCATAGCCTGGAACACAATTTTCCCATTTCTCTTTGACTTTTTCATTTGAAAGGCTTTTCCTTACAGTTGTGCTTAAAGGAGTCTCCTGATTCTCACAAAATAAGCCGTATAAATGTTAGTTTGATTGTGAGATTCTGTATTCTCATCTTTTTCTGAGAGGTATCTGGCCTTGAGTGCAAGAGGCTTTTTAGCCCCTTGTAGGCTACACATGTCTAAACTCCTGCCTGCTGCTCCCTGCCAGCATGGTGTATATTCCTCATGGTGTCCCAAGCCTTTCCACCTTGCTCCTAAGAGAGATGGCAGCAAATTGAAGGCAATTGAGATTTTTCCAAGCATTTGGTGGTGATTGCAAGGGTAGGATTGGGTAGCAGGAATGTGATGCCTGTCTGACATGCAATCCACTCTGTTTTCAG
Seq C2 exon
TACTGCGTGTGTGTAGATGACTGCTCCTCTAGCACCTGCATGTGTGGCCAGCTGAGCATGCGCTGCTGGTATGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893-Ehmt1:NM_001109687:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PU(44.3=95.9)
A:
NA
C2:
PF0503311=Pre-SET=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATCGCTCGAGGGTATGAGC
R:
CTTATCATACCAGCAGCGCATG
Band lengths:
222-961
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: